params | R Documentation |
Parameter Descriptions for ypr Functions
tmax |
The maximum age (yr). |
k |
The VB growth coefficient (yr-1). |
Linf |
The VB mean maximum length (cm). |
t0 |
The (theoretical) age at zero length (yr). |
k2 |
The VB growth coefficient after length L2 (yr-1). |
Linf2 |
The VB mean maximum length after length L2 (cm). |
L2 |
The length (or age if negative) at which growth switches from the first to second phase (cm or yr). |
Wb |
The weight (as a function of length) scaling exponent. |
Ls |
The length (or age if negative) at which 50 % mature (cm or yr). |
Sp |
The maturity (as a function of length) power. |
es |
The annual probability of a mature fish spawning. |
Sm |
The spawning mortality probability. |
fb |
The fecundity (as a function of weight) scaling exponent. |
tR |
The age from which survival is density-independent (yr). |
BH |
Recruitment follows a Beverton-Holt (1) or Ricker (0) relationship. |
Rk |
The lifetime spawners per spawner at low density (or the egg to tR survival if between 0 and 1). |
n |
The annual interval natural mortality rate from age tR. |
nL |
The annual interval natural mortality rate from length Ln. |
Ln |
The length (or age if negative) at which the natural mortality rate switches from n to nL (cm or yr). |
Lv |
The length (or age if negative) at which 50 % vulnerable to harvest (cm or yr). |
Vp |
The vulnerability to harvest (as a function of length) power. |
Llo |
The lower harvest slot length (cm). |
Lup |
The upper harvest slot length (cm). |
Nc |
The slot limits non-compliance probability. |
pi |
A vector of probabilities of capture to calculate the yield for. |
rho |
The release probability. |
Hm |
The hooking mortality probability. |
Rmax |
The number of recruits at the carrying capacity (ind). |
Wa |
The (extrapolated) weight of a 1 cm individual (g). |
fa |
The (theoretical) fecundity of a 1 g female (eggs). |
q |
The catchability (annual probability of capture) for a unit of effort. |
RPR |
The relative proportion of recruits that are of the ecotype. |
all |
A flag specifying whether to include all parameter values. |
u |
A flag specifying whether to plot the exploitation rate as opposed to the capture rate. |
percent |
A flag specifying whether to plot the number of fish as a percent or frequency (the default). |
color |
A string of the color around each bar (or NULL). |
population |
An object of class |
populations |
An object of class |
ecotypes |
An object of class |
plot_values |
A flag specifying whether to plot the actual and optimal values. |
Ly |
The minimum length (trophy) fish to consider when calculating the yield (cm). |
harvest |
A flag specifying whether to calculate the yield for harvested fish or captures. |
biomass |
A flag specifying whether to calculate the yield in terms of the biomass versus number of individuals. |
title |
A string of the report title. |
date |
A date of the report date. |
file |
A string of the path to the file (without the extension). |
binwidth |
A positive integer of the width of the bins for grouping. |
type |
A string indicating whether to include 'both' or just the 'actual' or 'optimal' yield. |
object |
The population or populations. |
... |
Unused parameters. |
expand |
A flag specifying whether to expand parameter combinations. |
view |
A flag specifying whether to view the report (after rendering it to html). |
ask |
A flag specifying whether to ask before overwriting or creating a file. |
description |
A string describing the population. |
age |
A numeric vector of the age (yr). |
length |
A numeric vector of the length (cm). |
names |
A character vector of unique ecotype names. |
x |
The object to coerce. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.