ypssc: Yeast-Proteome Secondary-Structure Calculator

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

Package details

AuthorSajad Tasharofi [aut, cph], Shashank Kumbhare [aut, cre, cph], Bent Petersen [aut], Morteza Khaledi [aut], Amir Shahmoradi [aut]
MaintainerShashank Kumbhare <shashank.kumbhare@mavs.uta.edu>
LicenseGPL (>= 3)
Package repositoryView on CRAN
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ypssc documentation built on Nov. 28, 2021, 1:06 a.m.