zebu: Local Association Measures
Version 0.1.1

Implements the estimation of local (and global) association measures: Ducher's Z, pointwise mutual information and normalized pointwise mutual information. The significance of local (and global) association is accessed using p-values estimated by permutations. Finally, using local association subgroup analysis, it identifies if the association between variables is dependent on the value of another variable.

Browse man pages Browse package API and functions Browse package files

AuthorOlivier M. F. Martin [aut, cre], Michel Ducher [aut]
Date of publication2017-04-26 16:33:15 UTC
MaintainerOlivier M. F. Martin <olivmrtn@gmail.com>
LicenseGPL-3
Version0.1.1
URL http://github.com/olivmrtn/zebu
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("zebu")

Man pages

estimate_prob: Estimate marginal and multivariate probabilities
format.lassie: Format a lassie object
lassie: Local Association Measures
lassie_get: Return the value of 'lassie' object
local_association: Local Association Measures
permtest: Permutation test for local and global association measures
plot.lassie: Plot a lassie object
preprocess: Preprocess data
print.lassie: Print a lassie object
subgroups: Local Association Subgroup Analysis
trial: Resistance to drug treatment
write.lassie: Write a lassie object
zebu: zebu: Local Association Measures

Functions

duchers_z Man page Source code
estimate_prob Man page Source code
format.lassie Man page Source code
generate_comments Source code
lassie Man page Source code
lassie_get Man page Source code
local_association Man page Source code
make_trial_dataset Source code
measure_error Source code
measure_name Source code
npmi Man page Source code
permtest Man page Source code
plot.lassie Man page Source code
pmi Man page Source code
preprocess Man page Source code
print.lassie Man page Source code
subgroups Man page Source code
trial Man page
write.lassie Man page Source code
zebu Man page
zebu-package Man page

Files

inst
inst/examples
inst/examples/lassie.R
inst/doc
inst/doc/zebu.Rmd
inst/doc/zebu.html
inst/doc/zebu.R
NAMESPACE
NEWS.md
data
data/trial.rda
R
R/estimate_prob.R
R/preprocess.R
R/zebu.R
R/data.R
R/local_association.R
R/permtest.R
R/make_trial_dataset.R
R/misc.R
R/subgroups.R
R/lassie.R
vignettes
vignettes/zebu.Rmd
vignettes/bibliography.bib
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/preprocess.Rd
man/subgroups.Rd
man/local_association.Rd
man/lassie.Rd
man/lassie_get.Rd
man/trial.Rd
man/permtest.Rd
man/estimate_prob.Rd
man/zebu.Rd
man/print.lassie.Rd
man/plot.lassie.Rd
man/write.lassie.Rd
man/format.lassie.Rd
zebu documentation built on May 19, 2017, 1:34 p.m.