zoon: Reproducible, Accessible & Shareable Species Distribution Modelling

Reproducible and remixable species distribution modelling. The package reads user submitted modules from an online repository, runs full SDM workflows and returns output that is fully reproducible.

AuthorTom August [aut, cre], Tim Lucas [aut], Nick Golding [aut], Emiel van Loon [ctb], Greg McInerny [aut]
Date of publication2017-01-12 15:13:42
MaintainerTom August <tomaug@ceh.ac.uk>
LicenseBSD_3_clause + file LICENSE
Version0.6
https://github.com/zoonproject/zoon

View on CRAN

Functions

AplumbeusOcc Man page
BuildModule Man page
cbindZoon Man page
Chain Man page
ChangeWorkflow Man page
CombineRasters Man page
Covariate Man page
CWBZim Man page
ExtractAndCombData Man page
FrescaloBias Man page
GetMaxEnt Man page
GetModuleList Man page
GetPackage Man page
LoadModule Man page
Model Man page
ModuleHelp Man page
Occurrence Man page
Output Man page
plot.zoonWorkflow Man page
print.zoonCitation Man page
print.zoonWorkflow Man page
Process Man page
Replicate Man page
RerunWorkflow Man page
RunModels Man page
subsetColumnsZoon Man page
summary.zoonWorkflow Man page
TransformCRS Man page
UKAirRas Man page
workflow Man page
zoon Man page
ZoonCitation Man page
ZoonFigshare Man page
ZoonModel Man page
ZoonModuleParse Man page
zoon-package Man page
ZoonPredict Man page

Files

zoon
zoon/inst
zoon/inst/extdata
zoon/inst/extdata/data_PO.rdata
zoon/inst/extdata/data_PB.rdata
zoon/inst/extdata/myData.csv
zoon/inst/extdata/myRaster.grd
zoon/inst/extdata/myRaster.gri
zoon/inst/extdata/data_PA.rdata
zoon/inst/doc
zoon/inst/doc/basic-zoon-usage.html
zoon/inst/doc/interactive_zoon_usage.html
zoon/inst/doc/basic-zoon-usage.Rmd
zoon/inst/doc/interactive_zoon_usage.Rmd
zoon/inst/doc/Building_a_module.Rmd
zoon/inst/doc/Building_a_module.html
zoon/tests
zoon/tests/testthat
zoon/tests/testthat/testExtractAndCombData.R
zoon/tests/testthat/testWholeWorkflows.R
zoon/tests/testthat/testGetModule.R
zoon/tests/testthat/Rplots.pdf
zoon/tests/testthat/testCombineRasters.R
zoon/tests/testthat/testSortArgs.R
zoon/tests/testthat/testplot.zoonWorkflow.r
zoon/tests/testthat/testBuildModule.R
zoon/tests/testthat/testRunModules.R
zoon/tests/testthat/testTransformCRS.R
zoon/tests/testthat/testLoadModule.R
zoon/tests/testthat/testFormatModuleList.R
zoon/tests/testthat/testsubsetColumnsZoon.R
zoon/tests/testthat/testSplitCall.R
zoon/tests/testthat/testplot.zoonCitation.R
zoon/tests/testthat/testcbindZoon.R
zoon/tests/testthat/testaccessors.R
zoon/tests/testthat/testprint.zoonWorkflow.R
zoon/tests/testthat/testCheckModList.R
zoon/tests/testthat/testZoonCitation.R
zoon/tests/testthat/testErrorModule.R
zoon/tests/testthat/testChangeWorkflow.R
zoon/tests/testthat/testLapplyGetModule.R
zoon/tests/testthat/testGetModuleList.R
zoon/tests/testthat/testGetPackage.R
zoon/tests/testthat/testPasteAndDep.R
zoon/tests/testthat/testcall_path.R
zoon/tests/testthat/testSplitArgs.R
zoon/tests/testthat/testChain.R
zoon/tests/testthat/testsummary.zoonWorkflow.R
zoon/tests/testthat/testWriteWorkflowMetadata.R
zoon/tests/testthat/testGetMaxEnt.R
zoon/tests/testthat/testModuleHelp.R
zoon/tests/testthat/testReplicate.R
zoon/tests/testthat/testRerunWorkflow.R
zoon/tests/testthat/testtestModule.R
zoon/tests/test-all.R
zoon/NAMESPACE
zoon/data
zoon/data/CWBZim.rda
zoon/data/UKAir.rda
zoon/data/AplumbeusOcc.rda
zoon/data/FrescaloBias.rda
zoon/R
zoon/R/test_outputs.R zoon/R/HelpFunctions.R zoon/R/test_parameters.R zoon/R/accessors.R zoon/R/GetPackage.R zoon/R/ZoonModuleParse.R zoon/R/zoon.R zoon/R/zoonPredict.R zoon/R/SearchFunctions.R zoon/R/ChangeWorkflow.R zoon/R/plot.zoonWorkflow.R zoon/R/test_module.R zoon/R/WriteWorkflowMetadata.R zoon/R/ZoonFigshare.R zoon/R/zoonHelpers.R zoon/R/Replicate.R zoon/R/print.zoonCitation.R zoon/R/ZoonCitation.R zoon/R/print.zoonWorkflow.R zoon/R/workflow.R zoon/R/DoModuleFunctions.R zoon/R/RerunWorkflow.R zoon/R/attributeFunctions.R zoon/R/CombineRasters.R zoon/R/summary.zoonWorkflow.R zoon/R/DataDocumentation.R zoon/R/BuildModule.R zoon/R/TransformCRS.R zoon/R/zzz.R
zoon/vignettes
zoon/vignettes/building_occ6-1.png
zoon/vignettes/building_cov4-1.png
zoon/vignettes/building_pro6-7.png
zoon/vignettes/building_pro7-1.png
zoon/vignettes/building_mod6-4.png
zoon/vignettes/building_out9-2.png
zoon/vignettes/basic_5-1.png
zoon/vignettes/occurrenceInOut.svg
zoon/vignettes/building_cov5-1.png
zoon/vignettes/building_out8-2.png
zoon/vignettes/building_pro6-6.png
zoon/vignettes/buliding_pro1a-1.png
zoon/vignettes/building_occ7-1.png
zoon/vignettes/building_pro1-1.png
zoon/vignettes/building_out7-2.png
zoon/vignettes/modelInOut.svg
zoon/vignettes/basic_12-2.png
zoon/vignettes/building_pro6-8.png
zoon/vignettes/building_cov5-4.png
zoon/vignettes/building_out8-1.png
zoon/vignettes/building_mod6-1.png
zoon/vignettes/covariateInOut.svg
zoon/vignettes/building_mod6-2.png
zoon/vignettes/building_pro6-2.png
zoon/vignettes/building_out8-3.png
zoon/vignettes/interactive_output-1.png
zoon/vignettes/building_cov5-2.png
zoon/vignettes/basic-zoon-usage.Rmd
zoon/vignettes/building_pro5-1.png
zoon/vignettes/building_mod7-1.png
zoon/vignettes/basic_11-1.png
zoon/vignettes/basic_11-2.png
zoon/vignettes/building_occ7-2.png
zoon/vignettes/processInOut.svg
zoon/vignettes/building_out7-1.png
zoon/vignettes/building_mod6-3.png
zoon/vignettes/building_pro6-9.png
zoon/vignettes/building_pro6-4.png
zoon/vignettes/building_cov5-3.png
zoon/vignettes/basic_12-3.png
zoon/vignettes/basic_15-1.png
zoon/vignettes/interactive_zoon_usage.Rmd
zoon/vignettes/building_pro6-3.png
zoon/vignettes/building_pro6-5.png
zoon/vignettes/interactive_noninteractive-1.png
zoon/vignettes/building_pro6-1.png
zoon/vignettes/Building_a_module.Rmd
zoon/vignettes/outputInOut.svg
zoon/vignettes/building_out9-1.png
zoon/vignettes/interactive_cross_validation-1.png
zoon/vignettes/basic_12-1.png
zoon/MD5
zoon/build
zoon/build/vignette.rds
zoon/DESCRIPTION
zoon/man
zoon/man/Chain.Rd zoon/man/FrescaloBias.Rd zoon/man/workflow.Rd zoon/man/AplumbeusOcc.Rd zoon/man/UKAirRas.Rd zoon/man/ChangeWorkflow.Rd zoon/man/zoon.Rd zoon/man/TransformCRS.Rd zoon/man/plot.zoonWorkflow.Rd zoon/man/GetPackage.Rd zoon/man/cbindZoon.Rd zoon/man/print.zoonWorkflow.Rd zoon/man/print.zoonCitation.Rd zoon/man/ModuleHelp.Rd zoon/man/BuildModule.Rd zoon/man/ZoonModuleParse.Rd zoon/man/RunModels.Rd zoon/man/Replicate.Rd zoon/man/GetMaxEnt.Rd zoon/man/RerunWorkflow.Rd zoon/man/ZoonPredict.Rd zoon/man/ZoonModel.Rd zoon/man/CombineRasters.Rd zoon/man/ZoonCitation.Rd zoon/man/CWBZim.Rd zoon/man/Occurrence.Rd zoon/man/LoadModule.Rd zoon/man/summary.zoonWorkflow.Rd zoon/man/ExtractAndCombData.Rd zoon/man/subsetColumnsZoon.Rd zoon/man/GetModuleList.Rd zoon/man/ZoonFigshare.Rd
zoon/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.