zoon: Reproducible, Accessible & Shareable Species Distribution Modelling

Reproducible and remixable species distribution modelling. The package reads user submitted modules from an online repository, runs full SDM workflows and returns output that is fully reproducible.

AuthorTom August [aut, cre], Tim Lucas [aut], Nick Golding [aut], Emiel van Loon [ctb], Greg McInerny [aut]
Date of publication2017-01-12 15:13:42
MaintainerTom August <tomaug@ceh.ac.uk>
LicenseBSD_3_clause + file LICENSE
Version0.6
https://github.com/zoonproject/zoon

View on CRAN

Files in this package

zoon
zoon/inst
zoon/inst/extdata
zoon/inst/extdata/data_PO.rdata
zoon/inst/extdata/data_PB.rdata
zoon/inst/extdata/myData.csv
zoon/inst/extdata/myRaster.grd
zoon/inst/extdata/myRaster.gri
zoon/inst/extdata/data_PA.rdata
zoon/inst/doc
zoon/inst/doc/basic-zoon-usage.html
zoon/inst/doc/interactive_zoon_usage.html
zoon/inst/doc/basic-zoon-usage.Rmd
zoon/inst/doc/interactive_zoon_usage.Rmd
zoon/inst/doc/Building_a_module.Rmd
zoon/inst/doc/Building_a_module.html
zoon/tests
zoon/tests/testthat
zoon/tests/testthat/testExtractAndCombData.R
zoon/tests/testthat/testWholeWorkflows.R
zoon/tests/testthat/testGetModule.R
zoon/tests/testthat/Rplots.pdf
zoon/tests/testthat/testCombineRasters.R
zoon/tests/testthat/testSortArgs.R
zoon/tests/testthat/testplot.zoonWorkflow.r
zoon/tests/testthat/testBuildModule.R
zoon/tests/testthat/testRunModules.R
zoon/tests/testthat/testTransformCRS.R
zoon/tests/testthat/testLoadModule.R
zoon/tests/testthat/testFormatModuleList.R
zoon/tests/testthat/testsubsetColumnsZoon.R
zoon/tests/testthat/testSplitCall.R
zoon/tests/testthat/testplot.zoonCitation.R
zoon/tests/testthat/testcbindZoon.R
zoon/tests/testthat/testaccessors.R
zoon/tests/testthat/testprint.zoonWorkflow.R
zoon/tests/testthat/testCheckModList.R
zoon/tests/testthat/testZoonCitation.R
zoon/tests/testthat/testErrorModule.R
zoon/tests/testthat/testChangeWorkflow.R
zoon/tests/testthat/testLapplyGetModule.R
zoon/tests/testthat/testGetModuleList.R
zoon/tests/testthat/testGetPackage.R
zoon/tests/testthat/testPasteAndDep.R
zoon/tests/testthat/testcall_path.R
zoon/tests/testthat/testSplitArgs.R
zoon/tests/testthat/testChain.R
zoon/tests/testthat/testsummary.zoonWorkflow.R
zoon/tests/testthat/testWriteWorkflowMetadata.R
zoon/tests/testthat/testGetMaxEnt.R
zoon/tests/testthat/testModuleHelp.R
zoon/tests/testthat/testReplicate.R
zoon/tests/testthat/testRerunWorkflow.R
zoon/tests/testthat/testtestModule.R
zoon/tests/test-all.R
zoon/NAMESPACE
zoon/data
zoon/data/CWBZim.rda
zoon/data/UKAir.rda
zoon/data/AplumbeusOcc.rda
zoon/data/FrescaloBias.rda
zoon/R
zoon/R/test_outputs.R zoon/R/HelpFunctions.R zoon/R/test_parameters.R zoon/R/accessors.R zoon/R/GetPackage.R zoon/R/ZoonModuleParse.R zoon/R/zoon.R zoon/R/zoonPredict.R zoon/R/SearchFunctions.R zoon/R/ChangeWorkflow.R zoon/R/plot.zoonWorkflow.R zoon/R/test_module.R zoon/R/WriteWorkflowMetadata.R zoon/R/ZoonFigshare.R zoon/R/zoonHelpers.R zoon/R/Replicate.R zoon/R/print.zoonCitation.R zoon/R/ZoonCitation.R zoon/R/print.zoonWorkflow.R zoon/R/workflow.R zoon/R/DoModuleFunctions.R zoon/R/RerunWorkflow.R zoon/R/attributeFunctions.R zoon/R/CombineRasters.R zoon/R/summary.zoonWorkflow.R zoon/R/DataDocumentation.R zoon/R/BuildModule.R zoon/R/TransformCRS.R zoon/R/zzz.R
zoon/vignettes
zoon/vignettes/building_occ6-1.png
zoon/vignettes/building_cov4-1.png
zoon/vignettes/building_pro6-7.png
zoon/vignettes/building_pro7-1.png
zoon/vignettes/building_mod6-4.png
zoon/vignettes/building_out9-2.png
zoon/vignettes/basic_5-1.png
zoon/vignettes/occurrenceInOut.svg
zoon/vignettes/building_cov5-1.png
zoon/vignettes/building_out8-2.png
zoon/vignettes/building_pro6-6.png
zoon/vignettes/buliding_pro1a-1.png
zoon/vignettes/building_occ7-1.png
zoon/vignettes/building_pro1-1.png
zoon/vignettes/building_out7-2.png
zoon/vignettes/modelInOut.svg
zoon/vignettes/basic_12-2.png
zoon/vignettes/building_pro6-8.png
zoon/vignettes/building_cov5-4.png
zoon/vignettes/building_out8-1.png
zoon/vignettes/building_mod6-1.png
zoon/vignettes/covariateInOut.svg
zoon/vignettes/building_mod6-2.png
zoon/vignettes/building_pro6-2.png
zoon/vignettes/building_out8-3.png
zoon/vignettes/interactive_output-1.png
zoon/vignettes/building_cov5-2.png
zoon/vignettes/basic-zoon-usage.Rmd
zoon/vignettes/building_pro5-1.png
zoon/vignettes/building_mod7-1.png
zoon/vignettes/basic_11-1.png
zoon/vignettes/basic_11-2.png
zoon/vignettes/building_occ7-2.png
zoon/vignettes/processInOut.svg
zoon/vignettes/building_out7-1.png
zoon/vignettes/building_mod6-3.png
zoon/vignettes/building_pro6-9.png
zoon/vignettes/building_pro6-4.png
zoon/vignettes/building_cov5-3.png
zoon/vignettes/basic_12-3.png
zoon/vignettes/basic_15-1.png
zoon/vignettes/interactive_zoon_usage.Rmd
zoon/vignettes/building_pro6-3.png
zoon/vignettes/building_pro6-5.png
zoon/vignettes/interactive_noninteractive-1.png
zoon/vignettes/building_pro6-1.png
zoon/vignettes/Building_a_module.Rmd
zoon/vignettes/outputInOut.svg
zoon/vignettes/building_out9-1.png
zoon/vignettes/interactive_cross_validation-1.png
zoon/vignettes/basic_12-1.png
zoon/MD5
zoon/build
zoon/build/vignette.rds
zoon/DESCRIPTION
zoon/man
zoon/man/Chain.Rd zoon/man/FrescaloBias.Rd zoon/man/workflow.Rd zoon/man/AplumbeusOcc.Rd zoon/man/UKAirRas.Rd zoon/man/ChangeWorkflow.Rd zoon/man/zoon.Rd zoon/man/TransformCRS.Rd zoon/man/plot.zoonWorkflow.Rd zoon/man/GetPackage.Rd zoon/man/cbindZoon.Rd zoon/man/print.zoonWorkflow.Rd zoon/man/print.zoonCitation.Rd zoon/man/ModuleHelp.Rd zoon/man/BuildModule.Rd zoon/man/ZoonModuleParse.Rd zoon/man/RunModels.Rd zoon/man/Replicate.Rd zoon/man/GetMaxEnt.Rd zoon/man/RerunWorkflow.Rd zoon/man/ZoonPredict.Rd zoon/man/ZoonModel.Rd zoon/man/CombineRasters.Rd zoon/man/ZoonCitation.Rd zoon/man/CWBZim.Rd zoon/man/Occurrence.Rd zoon/man/LoadModule.Rd zoon/man/summary.zoonWorkflow.Rd zoon/man/ExtractAndCombData.Rd zoon/man/subsetColumnsZoon.Rd zoon/man/GetModuleList.Rd zoon/man/ZoonFigshare.Rd
zoon/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.