getCohortWGS: Calculate z-scores for WHZ, HAZ, WAZ using the WHO Growth...
In zscorer: Child Anthropometry z-Score Calculator
Description
Usage
Arguments
Value
Examples
Description
Calculate z-scores for WHZ, HAZ, WAZ using the WHO Growth Reference (2006)
for a cohort or sample of children.
Usage
1
2
getCohortWGS(data, FUN = getWGS, sexObserved, firstPart, secondPart,
index)
Arguments
data
Data frame containing the variables needed for calculation
FUN
Function to apply; default to getWGS()
sexObserved
Sex of child (1 = Male; 2 = Female)
firstPart
Weight (kg; for WHZ and WAZ) or height (cm; for HAZ)
secondPart
Age (months; for HAZ and WAZ) or height (cm; for WHZ)
index
One of "wfh", "hfa", "wfa" (specifies the required index)
Value
Numeric vector of z-scores of the anthropometric index selected
The function fails messily when secondPart is outside of the range
given in the WGS reference (i.e. 45 to 120 cm for height and 0 to 60 months
for age). It is up to you to check the ranges of your data.
The reference data for W/H assumes supine length is used for children with a
standing height below 85cm
Heights should be specified in cm to the nearest mm (i.e. to 1 d.p.)
Ages should be specified in whole months
Weights should be specified in kg to available precision
The function requires reference data wgsData included in this package
Examples
1
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3
4
5
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8
9
10
11
12
13
14
15
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17
18
19
20
21
# apply getWGS to first child in sample data anthro1
wazAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "weight",
secondPart = "age",
index = "wfa")
wazAll
hazAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "height",
secondPart = "age",
index = "hfa")
hazAll
whzAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "weight",
secondPart = "height",
index = "wfh")
whzAll
Example output
[1] -0.756055486 -1.390215032 -1.055978534 1.415750955 -2.677572422
[6] 1.492380502 -0.129877040 -0.023481593 -1.506473442 -1.543816296
[11] -2.874957122 -0.434972402 -1.038995403 -1.692818549 -1.312458980
[16] -2.210032596 -0.011892256 -0.909177616 -0.678398553 -0.947466947
[21] -2.499604250 -0.956596436 -1.654426862 -1.250527597 0.673357507
[26] 0.301563007 0.242613457 -2.786707088 -1.158206506 -1.154771825
[31] -1.355408197 -0.591349587 -4.149672176 -0.457487519 -0.743316691
[36] -1.697258365 -1.057450666 -0.188695078 -0.420957702 -2.210304143
[41] -1.305367153 -3.637781428 -0.606625256 -0.543604699 -1.591717797
[46] -1.747457376 -0.348033375 0.698961487 -0.744671297 0.189245725
[51] -1.481088556 -1.957531446 -1.311912614 0.301554844 -0.757890327
[56] -1.226363368 -1.274787811 -0.145532096 -1.304808185 -1.962091877
[61] -1.928346854 -1.045541559 -1.397289784 -1.481088556 -0.749372496
[66] -1.125037571 -2.776300420 -0.198826369 0.042195760 -0.521945326
[71] -1.465031581 0.854087182 -1.637194752 0.314098599 -0.812227665
[76] -1.002263141 -0.447220866 -1.172281706 -2.153122123 -1.818201583
[81] -1.131968739 -2.868805513 -0.735551227 -2.430221048 -2.872771868
[86] -0.943465717 -2.748662500 -2.550612731 -1.967110644 -3.365311234
[91] 0.741080763 0.233970396 -1.169615107 -1.543684754 -0.501936967
[96] -2.804976960 -1.895827835 -1.713427237 -1.872694403 -1.648348298
[101] -1.653569907 -0.664600505 -1.811316644 0.143249353 -3.229518785
[106] -2.583688246 -2.218952825 -0.286176123 -0.531412722 -1.673624449
[111] -1.909606074 -2.776300420 0.120104700 0.546563755 -0.879654589
[116] 0.124839647 -2.852646118 -3.083157784 -2.823920666 0.315261149
[121] 0.209088574 -2.476374011 -2.122715091 -0.318150340 -1.312458980
[126] -1.695358739 -0.902766193 -0.373410410 -1.112382697 -1.879607319
[131] -2.892609089 -1.513067916 -1.332513353 -1.551030431 -2.041633539
[136] -0.275693702 -0.944461306 -0.209682330 -2.238226801 -3.592510318
[141] -2.013488349 -0.084605129 -1.105513344 -1.531545257 0.617931505
[146] -2.743872367 -3.493445475 -1.153931285 -1.846156645 0.225663608
[151] -1.532200095 0.359795481 -2.952944021 -2.161430916 -0.910802060
[156] 0.552954267 -1.363669512 -0.878309363 -2.196964263 -1.859606282
[161] -0.844611315 0.131834686 -1.633907207 -0.141055654 -2.297881902
[166] -1.744077852 -2.404642192 -0.640953054 -3.805458627 -2.175400988
[171] -3.175229907 -4.951617316 1.060809620 -1.411766933 -0.086520173
[176] -1.059711075 -1.595718548 -1.304808185 1.683150739 0.287619430
[181] -2.466697289 -3.877673946 -3.715955123 -5.069451389 -1.292488999
[186] -2.132021716 0.097411137 -5.327514429 -2.024963023 -0.717288982
[191] -0.404520268 -1.577966855 -1.950532218 -3.048756422 -1.489593749
[196] -0.343636789 0.824983186 -1.399353926 -1.648172643 -4.367371436
[201] -3.433431026 -0.598778294 -2.601971260 -0.231187486 -1.957531446
[206] -3.681708972 -0.546363468 -3.068549949 -0.730357826 -1.144613582
[211] -1.997551142 -0.767387647 -1.074102109 -1.141639829 -2.245087848
[216] -1.751902365 -0.624691967 0.484916295 -0.154383628 -2.412799886
[221] 0.484102095 0.113248367 -1.819784699 -0.524863586 -2.241480963
[226] 0.232574778 -0.592830223 -4.408006457 -0.916470904 -0.270281822
[231] -3.362407730 1.659060555 -2.330062628 -0.025358589 -2.266557118
[236] -1.906475790 -0.162723565 -0.909685477 -3.015559997 -1.487433025
[241] -2.638696253 -0.328848959 -0.982682844 0.360114336 -2.351076974
[246] -0.878212777 -2.837649328 -2.201048684 -0.660124491 -1.367404192
[251] -1.464122373 -2.175835476 -1.775624791 -2.984881693 -1.713427237
[256] 1.830183855 -0.657047325 -2.102158382 -2.462376472 -1.896835294
[261] -0.406636636 -2.867595482 -0.449522123 -1.570105496 -2.671399103
[266] -1.246443716 -0.851668189 1.196571231 -0.359280565 -3.434281901
[271] -2.019348230 -2.311109808 0.715963423 -0.907679960 0.546544175
[276] -1.937404501 -0.697417462 -1.141639829 -0.549192808 -2.154154451
[281] -2.685855791 -1.855047344 -3.094781320 -0.337836304 -0.351805641
[286] -3.177111729 -2.629294375 -1.081084723 -1.937227979 -0.245582426
[291] -1.627670643 0.354050543 -2.798447133 -0.689401520 0.182498736
[296] -0.112542159 1.594478333 0.508973986 -3.108289096 -0.663817695
[301] -0.221651631 -0.034977312 -3.183148429 1.853282581 -0.792791017
[306] -1.576880204 -0.123516659 -2.845299102 -1.604658179 0.205987272
[311] -2.051523837 -2.301013361 -0.384022524 -0.230183057 -3.026927179
[316] -0.835240203 -2.462999394 -0.109811373 -1.960514990 -0.878309363
[321] -1.394810748 -2.351455627 -1.543684754 -0.715547505 -2.945522502
[326] -0.617988079 -0.272684214 -0.342539895 -2.852646118 -3.084644744
[331] -1.170014829 -0.093618819 -0.781064479 -0.498923459 -3.163469027
[336] -3.646604750 -1.049788802 1.624849713 -2.748662500 -2.972835153
[341] -0.434972402 0.062925270 -2.284855185 -2.747861331 -1.643124128
[346] -0.546904918 -1.241599699 -2.697575527 1.122813676 -2.466697289
[351] -2.126793106 -0.863317478 -1.551030431 -0.525671169 -1.620356652
[356] -1.480633991 0.659527471 -2.148186825 -0.626673702 -1.172186556
[361] -0.989785269 -2.852646118 -1.038912856 -1.850928121 -2.982414705
[366] -1.817759528 -0.231187486 -1.906475790 0.114824375 -1.000060046
[371] 0.554692600 -0.042255588 -3.268576579 -1.470900381 -2.748662500
[376] -1.788749384 -3.226884329 -0.743534869 -0.572020880 -1.670026320
[381] -3.415159500 -0.714024159 -0.817410344 -1.755385241 -0.200526598
[386] -4.477574185 -0.645911959 -0.815842738 -3.096726406 1.029333951
[391] -2.930995215 -1.389912367 -2.609795520 -1.456936597 -0.916470904
[396] -2.529748930 -0.750465925 -3.326437506 1.656554460 -1.692179889
[401] -1.104944738 -0.956596436 -1.582545376 -1.142387124 -0.584079302
[406] -3.410344932 -0.595649505 -0.817341033 -0.498532338 -5.039788691
[411] -3.083157784 -2.485977391 -2.350118962 -2.689754701 0.833784797
[416] 0.758391899 -0.518548924 -1.879607319 -0.121723944 -1.504595211
[421] 0.003316075 0.599922687 -3.337108252 2.324555793 -2.875030801
[426] -1.152732408 -1.569441473 -1.243250254 -1.014305170 1.604764700
[431] -0.195662157 -1.930618814 0.268531118 -0.214333202 -1.342903149
[436] -0.216382295 -1.521747332 -2.919187060 0.567307198 -4.651884618
[441] -1.349340494 -2.114330307 -0.946376876 -0.663455149 -0.268177085
[446] -0.128654219 -1.944055028 -1.544890736 -0.014281488 -1.650517990
[451] -1.410010752 -3.524498776 -1.226363368 -0.452656139 0.090162278
[456] -1.480633991 -1.262175350 -0.927424651 0.501466357 -0.249922102
[461] -4.511094693 0.374835201 -2.603203677 -2.399370924 -2.666782401
[466] -2.193814705 -1.523353689 -3.342403222 -0.933738370 -0.844176406
[471] -2.134256394 -0.871521751 -1.216546155 0.058795927 -1.361065260
[476] -0.014281488 -2.813667619 -1.731457716 -0.687324323 -0.305595522
[481] -4.039396324 1.005822670 -1.343177590 0.101291935 -2.408153427
[486] 1.075956965 -0.449522123 -1.454843573 -2.350118962 -0.447220866
[491] 0.421537602 -1.049986755 -2.052932471 -0.649019916 -2.051958705
[496] -1.951960311 -4.254778035 -2.534408271 0.531976227 -1.478207396
[501] -2.550612731 1.766831596 1.025450917 -0.323438320 -3.083459957
[506] -1.961505342 -1.100241679 -0.452489616 -3.030742894 -4.066108952
[511] 0.498851361 -2.318231031 -1.475287430 0.803568582 -0.804359848
[516] -2.568949038 -0.685565429 1.097742915 -0.076376870 -1.885063827
[521] -0.948512096 -1.936713057 -1.701211743 0.130129784 -3.845337433
[526] -0.331889357 0.724186061 -0.271255044 0.645253177 -0.809001348
[531] -1.042698295 -0.701776155 -0.605678014 -1.241599699 -4.014604456
[536] -0.743660212 -0.858444864 -3.428359547 -0.344626732 -1.448416374
[541] -1.085946409 -1.549164179 -1.180456124 0.274568696 -0.762104740
[546] -1.657673616 0.153570942 -0.638731864 -1.725515858 -2.913894869
[551] -2.132464038 -2.888030513 0.436084121 -0.409948871 -0.858652176
[556] -2.840267647 -0.129877040 -1.388124454 -1.464762653 -0.308801294
[561] -1.393951704 -0.404520268 -4.664513469 -2.860611693 2.966593355
[566] -2.474342401 -1.951960311 -1.411579782 -0.333674773 -2.158028743
[571] -4.011807265 -0.123516659 -2.016781977 -2.313538179 -1.685406984
[576] -1.125037571 -0.257199864 -3.030742894 -2.042630562 -2.596165900
[581] -1.353288267 2.266619108 -2.550530853 0.762734511 0.557075564
[586] -1.364228189 -1.074102109 -0.511081531 -1.087875713 -1.642167585
[591] -0.756778223 -1.775358593 -1.387207574 -0.172291102 -2.514542483
[596] -1.071869289 -0.634877120 -2.350118962 -3.835376421 -1.668819462
[601] -1.525451697 -1.889753425 -2.445798052 -2.062251974 -0.804359848
[606] -1.353288267 -3.287335255 -0.562606796 -2.584900012 -0.137833590
[611] -3.046645181 -2.408153427 0.778753435 -1.389912367 -1.696435815
[616] -1.850999818 -1.411766933 -0.522322077 0.778384280 -1.964497833
[621] -1.988019429 -1.763834261 -0.845180918 -1.473675968 -0.470367764
[626] -0.289366093 -4.087888560 -0.270281822 -2.303637370 -0.482029856
[631] 0.464160455 -2.435950945 -2.621198857 -2.126793106 -0.209682330
[636] -1.509367003 1.289057432 -0.767052573 -1.700482921 -2.269642865
[641] -1.002263141 -2.215960625 -1.524536607 -1.475287430 -1.627670643
[646] -2.418634789 -0.193240433 -1.027979181 -0.040013672 0.027710306
[651] 1.205587671 -0.613928267 0.495278185 -2.456080880 0.436084121
[656] -1.376517027 -3.526586034 -1.624976321 -2.866375030 -1.332737687
[661] -0.030921521 -2.031149118 -0.132988301 -1.799535611 -2.603203677
[666] -0.589188541 -0.437628860 -2.162872522 -0.238066632 -0.988275103
[671] 2.103491750 -1.147769848 -2.823920666 -2.187585929 -1.509367003
[676] -0.335766390 -0.813109640 2.551604501 -0.152565280 -1.760010328
[681] 0.351233604 -2.025953359 -1.692818549 -1.648348298 0.675125807
[686] 1.641129715 -0.997128278 -1.080035704 -0.827786980 -0.503220678
[691] -2.174841454 -0.262529902 -1.657673616 -1.172281706 -1.707753151
[696] -2.428866741 -2.272017605 -0.280036813 -0.838269831 -3.168505051
[701] -0.160582375 -0.316093558 -3.328803635 -0.315868701 0.068344284
[706] 0.436084121 -1.285488843 -2.529748930 -0.324737326 0.075253298
[711] -1.782714555 -2.891236422 -0.878309363 -1.903092625 -0.860248820
[716] -0.702754409 -1.775720121 -1.849894742 -0.628198870 -2.184054769
[721] -3.001646010 0.267970601 -1.106291572 -3.274035863 2.132214614
[726] -1.898739963 -2.197815642 -1.389751490 -1.333609157 -0.376548425
[731] -1.725515858 -1.706310228 -1.412103599 -3.068806776 -1.470900381
[736] 1.327696179 -1.576880204 -0.651362633 -0.755316902 -2.741776036
[741] -1.059711075 1.207201995 -2.071206423 -0.008165454 -0.422695504
[746] -1.805834528 0.075253298 0.028631512 -1.026902741 -1.250906814
[751] 0.328478004 -1.370781875 -1.642348564 -2.952944021 -2.115011933
[756] -1.692818549 -0.947018947 -0.819916798 -2.419833091 -1.511242282
[761] -1.353288267 -1.153931285 1.656554460 -1.169318856 -1.103874820
[766] 0.734507043 -0.943273158 -0.211721260 -2.901500553 -2.360617971
[771] 0.488710373 -2.188135215 -2.826634719 0.903004850 -1.421667610
[776] 0.116233552 -0.025358589 -2.674200233 -0.027168645 0.003316075
[781] -2.747861331 -2.435605996 -1.459565720 -2.832711598 -1.659875006
[786] -1.515805936 -0.708608966 -0.727915306 -0.450772962 -0.177468244
[791] -2.167216091 -2.089107721 0.977002274 -1.037272298 -1.515805936
[796] -1.798663137 -2.210304143 -2.692434016 -0.216382295 -1.906475790
[801] -1.944771848 -2.592449469 -0.430535627 -1.051552300 -1.840658484
[806] -3.383950213 -0.974877565 -1.485446939 -1.574010185 -1.772335638
[811] -1.325962622 -2.360617971 0.299402915 -3.334475623 0.973319452
[816] -2.098858543 -0.930134981 -1.596543076 0.107549191 -2.307175486
[821] -0.183040002 -0.547336342 -1.990288709 -0.188695078 -1.554983693
[826] -2.210304143 -0.141055654 -0.753262437 -0.643845767 -0.155222438
[831] -0.661878973 -2.528107466 -2.135988044 -1.659875006 -1.172186556
[836] -0.637561917 -1.538117281 -2.364641588 -2.985367166 -0.136270930
[841] -0.521945326 -1.431643354 -1.602651852 -1.294456317 -2.421870681
[846] -0.952420756 -2.599948845 -2.653390053 -0.269574295 -4.207402273
[851] -0.663694269 -0.724066677 -1.165794147 -0.256948978 -2.098324404
[856] 0.286117864 0.975075622 -2.748662500 -0.295178066 0.242613457
[861] -2.016633344 -2.200605501 -2.491486698 -0.678143030 0.000000000
[866] -1.509367003 0.003316075 -1.835853172 -2.059231383 -0.025358589
[871] -3.428359547 -0.731155305 -1.015223977
[1] -1.225816946 -2.347588600 -2.951804110 -0.281285163 -4.205666336
[6] -0.538767762 -2.402071937 -1.031769943 -2.741088448 -4.703757107
[11] -2.567054999 -2.114496047 -2.232350548 -2.315545790 -2.751616526
[16] -2.793069374 0.112134888 -1.900179710 -2.954372959 -1.967104178
[21] -3.871652199 0.866720638 -2.825206927 -2.141228500 -2.799464293
[26] 0.549645927 -1.437200160 -3.797940968 -2.566175205 -1.830118281
[31] -1.654858885 -2.711033318 -3.639964208 -1.795506877 -1.677509989
[36] -1.031769943 -0.435688124 -1.266015205 0.499032644 -4.608566028
[41] -3.166235115 -1.069592983 -1.847793611 -2.550231358 -1.830118281
[46] -2.275549336 -3.281653219 0.487677381 -2.439641036 -0.479474373
[51] -2.450429333 -3.205342947 -3.769430576 -0.277522775 -0.365386792
[56] -2.581582674 -1.777577458 -0.954753624 -2.959961331 -3.140270937
[61] -2.377870949 -2.187306414 -2.558538134 -2.180662247 -3.237652935
[66] -2.263484502 -4.200005278 -0.280901088 -3.518043240 -0.243778110
[71] -1.054376364 0.181249949 -2.485976566 -1.614151364 -2.992821011
[76] -2.455903841 -1.968311162 -1.208150734 -2.346087378 -2.191971354
[81] -2.626496085 -4.662923799 -2.211062752 -3.960598636 -3.100749795
[86] -4.523449084 -1.475548558 -0.355471426 -2.574438064 -1.839393339
[91] -1.461962885 2.288305751 -2.700799038 -2.447733338 -1.400156261
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[251] 0.0768118227 -0.2889320645 0.2707525516 -3.7466909463 -0.5770779677
[256] 3.8249414300 0.0416559358 0.0979314351 0.8721986351 0.4831892942
[261] 2.1769242212 -0.5725909753 -1.9823929095 -0.1152542033 1.4729383662
[266] -0.6401410111 0.2896455151 1.0067290441 0.7353210213 -0.7830648277
[271] 0.1551828563 -0.0178930846 1.6351776272 0.9148198152 -0.3810707170
[276] -1.4064142030 -0.3158492450 -0.3353149295 -0.6539066002 0.0439606448
[281] -1.3911229198 0.0947694419 0.6592033453 0.8961117851 0.8453430296
[286] -0.7102999243 -1.2330867027 0.9444936090 -0.9321847029 1.7862387792
[291] -0.9897039153 2.1677676947 0.2952774532 -0.3043018708 0.0864741626
[296] -2.1633361748 0.9917750394 0.3364862040 -1.7488567017 -0.0591098165
[301] 1.0430022139 1.0491253280 0.8859224026 1.4156353369 0.7341331305
[306] 0.8397992334 -0.0188529163 -0.9851695735 -0.1178183489 0.1311747434
[311] -0.0189629160 -0.4838599499 0.9040132938 0.4608594118 0.9130828542
[316] 1.5882432832 1.9428446741 1.2370853295 -1.0867388645 -0.0548513735
[321] -0.2667661609 0.8963476471 -0.1654257834 0.4482842014 -0.2124122237
[326] 0.6047418962 1.7674089434 0.9645510247 -0.9752071713 -1.8836060049
[331] -0.4366155153 0.9586801115 1.3191883010 1.8165099927 -1.1636981911
[336] -2.5522143656 -0.4324828988 1.6265647913 -0.9004147511 -0.0186145187
[341] -0.7022828878 1.1994972409 0.1723880152 -1.6943578704 -1.8560354864
[346] 0.2233555849 0.6886026162 -0.3792683035 4.3753533624 -1.0149718074
[351] -0.7867108303 0.6983558389 -1.3069999256 0.0033064785 0.7498183133
[356] -1.0757084732 1.7181020228 0.7533612244 1.3993027621 -0.3570955905
[361] -0.3948264812 -0.4365818797 -0.9924304432 0.8420146207 1.4135056827
[366] -0.6757122916 3.3805549076 0.0754499195 -0.3367200865 0.4641085669
[371] 0.4174781103 -0.0318807461 -1.6992637998 -0.8790481055 -1.5050684123
[376] 1.0206171691 -0.9005541424 1.8722946152 1.8587348075 0.2225106170
[381] -0.9644044035 0.0768118227 0.4692328676 -1.0712742049 0.1565004689
[386] -1.4237593747 0.5818357676 1.3821693632 -0.7174321628 1.2276404883
[391] -1.2119990766 -0.2409267648 0.4659010264 -0.9854198292 -0.4822936395
[396] -1.2091195107 0.1365199696 -1.4536686382 2.7031636658 1.2040871514
[401] 0.5916033870 0.5995817123 0.0061210875 2.2624384101 0.0587552057
[406] -0.6557124526 2.0605332952 1.5057362624 0.2144810497 -2.5123759246
[411] -1.7304269850 -2.3793179474 -0.7180772774 1.1184196431 0.7124498472
[416] 1.5939748869 1.5209201217 -0.7232212286 0.9312523962 0.4580390160
[421] 1.3544257537 0.6160559635 -0.6785545053 3.8118442466 -1.1255997689
[426] -0.5238108224 0.8290149113 0.3815430977 1.1044265835 1.1982271349
[431] 2.8996725871 -0.8136075420 0.8898298148 0.8001842708 0.6309766860
[436] 3.4032383887 -1.6143553564 2.3110405182 3.4573614575 -1.9033622472
[441] 2.5110501222 -1.4301368166 1.1179148909 0.2969864813 0.3654867616
[446] 0.7843634867 -0.7705090104 -0.4104754304 0.3449095859 -0.0005578803
[451] -0.4337409801 -1.7923795378 -1.3657466267 1.3251107090 -1.0812864732
[456] 0.6774166484 -0.0980938236 -0.0654323267 -0.3316434181 0.8703017080
[461] -1.9114510190 0.8800643914 -0.5641048814 0.9306368094 -0.3894801347
[466] -1.7521867849 -2.3139293940 -1.5847479095 1.1570680429 0.0373464924
[471] -1.0978023657 0.6035222152 -0.1255777382 0.6387656800 1.3085995627
[476] 0.6701643532 -1.8804449994 -0.3922273506 -0.2101890754 0.3138900413
[481] -2.6429907746 3.4304255638 0.1293336320 0.5430238256 0.5542894090
[486] 1.8546036803 -0.4091280260 -0.8989867804 -0.3665570599 0.7986432448
[491] 0.6892764808 -1.7006226820 -0.2142358040 -0.9869753098 -1.4755745854
[496] 0.4961533727 -1.5469423218 0.6330250497 3.0126566411 2.1196381137
[501] -1.1989121952 1.3692638995 1.2887683893 -0.2727907779 -0.6622467684
[506] 1.3754972631 -0.0623980538 0.9491447268 -1.3043163524 -2.9729602464
[511] 0.5744312675 0.0705923671 -0.8136075420 0.6088258620 0.9193780134
[516] -0.3643409078 -2.2934644451 0.9698612266 2.6288573479 -0.2319036098
[521] 0.3242389172 0.0935991794 0.0786205825 2.2558848721 -2.6814963446
[526] 1.1076034739 0.7419494371 -0.8866928720 3.2284614455 0.9893224939
[531] -1.4382294013 -0.8866928720 0.6953817022 0.3317707542 -1.1733028177
[536] 0.5724598915 -0.2166372664 -1.1772792160 1.0807696530 -0.6142798139
[541] -1.8169970052 0.2269929252 -0.4607885668 1.4765401532 0.1191478117
[546] -0.3733359682 1.0805805653 1.1250044849 0.7596444649 0.5165394897
[551] -0.7059923576 0.4597168309 0.2681595146 0.6688430460 -3.0830927001
[556] -2.6207682030 2.5006831207 0.4405350291 -0.8420746817 0.0223439101
[561] -1.6845354011 1.4439977745 -3.9980349960 -0.7769638586 2.2981289275
[566] 0.7652622933 -0.0957138351 0.9077498799 0.0147671850 -1.2304141940
[571] -1.2732893615 -1.1552248477 1.3595556120 -1.4985808419 -0.5972245736
[576] 0.4898871506 2.5757812590 -0.5847215007 0.2265698744 -1.5791048030
[581] 0.0399566277 4.7400192487 0.3831836000 0.1841479805 1.4725861445
[586] 1.0297324850 1.4747131717 -0.5021496930 0.7490856320 0.5839962902
[591] 1.8555383941 0.3760819718 -0.0793326606 1.0069657210 -1.9662375275
[596] 0.1165606125 0.7962862589 -1.4884096243 -0.7562031156 -0.4456983945
[601] -0.4982968345 0.2103895218 -2.0412786216 -0.5411987227 -0.3835248474
[606] 0.6622251563 -1.1480547866 -2.2027884954 -1.1017240784 1.2282977229
[611] -1.6072569529 0.3341982223 1.4791757444 -0.0936422373 0.5897793293
[616] 1.1362091060 -0.4843870259 1.0570468952 1.7151545329 -1.4090211044
[621] -2.3288252089 -0.0617214925 0.5932077014 -1.5541364809 0.3516913750
[626] 1.2012946540 -0.9913567801 0.1927156436 -0.9295268879 2.2602491241
[631] 1.0214480011 0.0210571802 -0.0044176046 -1.1480168202 2.9523870249
[636] 0.2163478726 3.1897007904 0.8596208087 0.5514722867 0.1679797268
[641] 0.7349968315 -0.2248063350 -0.2386906385 0.0290607781 1.3252156372
[646] -1.0506258119 0.2795027597 0.1441383470 0.7517855804 0.8093572949
[651] 1.7932175096 0.6957881363 0.8811297040 -0.5044555679 1.2367741914
[656] -0.6407075492 -0.4988999124 -1.4168998979 1.0057779087 -0.9039531014
[661] 1.6793818078 0.5699633633 1.1742700619 0.4109899860 -0.2095158760
[666] 0.3394714862 0.5753345856 0.1804495923 -0.2344839340 0.7866511233
[671] 2.4731257870 -0.7523168490 -0.3733359682 -0.0199012933 0.6719195850
[676] 0.2797182813 -0.5028969866 3.9404934875 0.7946751264 -0.5224567629
[681] 1.1357396773 0.9231505259 -1.1518397589 0.4691624533 3.3700490910
[686] 4.2799830665 0.0048982575 0.4270913253 0.0514724353 0.3153233226
[691] -0.0908388955 1.1345990634 -0.1763354058 0.5198670342 0.2649421032
[696] -1.3105622482 -0.3270228611 -0.8885397601 0.9041033467 -2.3244983833
[701] 2.4215412279 3.0632545863 -1.0303890631 2.8730258495 0.9043725058
[706] 2.7311868970 -0.3368401088 -1.6492376784 0.5693944169 0.4223409670
[711] -0.5031664172 -0.6504227389 0.6456299628 -1.0530357982 2.1404312880
[716] -0.4693447928 0.2193041186 -1.9994236207 0.3161994359 -2.3288252089
[721] -2.2961887745 2.0306591253 2.4894878401 -1.8994569156 0.9690606083
[726] -1.2301981777 -0.1925274715 -0.4822936395 1.1233218699 1.0437503350
[731] -0.1666960175 0.8636371459 0.1279905369 -1.2116403633 -0.6070652901
[736] 2.4661066612 0.3547787355 -0.3468321123 0.3717413625 -0.3737450849
[741] -2.1058788758 3.3097165524 -0.7467483637 1.4791493712 0.9547210718
[746] -0.4143663154 -0.3189597765 1.3420393739 -1.2594086810 0.0305519032
[751] 2.9873742449 -0.1130092808 0.2660232281 1.3750965890 -1.0365537446
[756] -0.2015575947 -0.7498205958 -0.2509820301 0.5936935976 0.2459579103
[761] -0.4195047602 -0.7173137620 2.1173060473 0.0759366129 -0.3488559780
[766] 0.2190089694 0.7685427632 0.2841709259 -2.5422714886 -0.6999117191
[771] 1.0547214966 -0.9986273122 -1.1679100734 0.8217562084 0.2054257305
[776] 3.3194610343 -0.1147058043 -0.1075114710 0.8980072828 0.5983185785
[781] -1.4444749260 -0.8408941479 -0.3570955905 0.4091854843 1.3854175247
[786] -0.0823262342 0.0033053625 0.7227914443 2.1237894061 1.0008194769
[791] -1.2043076018 -0.4214335166 2.3481794063 0.4789702237 -0.5806151002
[796] 0.0095935352 0.5312461040 -0.2161992763 -0.0321136581 0.5691174290
[801] -1.8185177477 -1.7729238118 0.0086777138 0.6760042886 -0.5908980195
[806] -1.1883668056 0.2299997711 -0.5266637906 0.4529613076 -1.3849639827
[811] -3.8494997222 -1.9181144253 3.5139759675 -2.3958056927 2.6556186738
[816] -3.3060561647 0.5919350311 0.0696764244 0.2212809971 -0.4574372987
[821] 0.8195644973 1.2697263823 -0.6869443272 0.0553436773 0.6607270693
[826] 0.4042754336 1.2571283933 0.3533438175 1.6864468732 -0.0716847136
[831] 0.8410286460 -0.2613114217 -1.0595884630 -0.8721458396 -0.9744905824
[836] 0.8734250937 -1.0913054487 0.3760819718 -0.4877817014 -0.0801535222
[841] 0.5073620513 1.3754841800 -1.4955762507 -0.0607232209 -0.1294087257
[846] 0.1571206573 -1.7094134649 -0.7266681479 0.3639432785 -2.5314231177
[851] 0.3839549237 0.9274407231 -0.8266059321 -0.4540676077 -0.3998456629
[856] 1.5894866152 1.2755068495 -2.2325122392 0.0530392535 3.4311503879
[861] -0.4843870259 -0.4893118635 -0.7728203841 0.2968775111 0.1464355323
[866] 0.5874674600 0.1201329986 -0.7092773263 -0.4793195480 1.6312441373
[871] -1.0609871453 0.6494952423 -0.7374493814
zscorer documentation built on Oct. 30, 2019, 9:43 a.m.
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Description Usage Arguments Value Examples
Description
Calculate z-scores for WHZ, HAZ, WAZ using the WHO Growth Reference (2006) for a cohort or sample of children.
Usage
1 2 | getCohortWGS(data, FUN = getWGS, sexObserved, firstPart, secondPart,
index)
|
Arguments
data |
Data frame containing the variables needed for calculation |
FUN |
Function to apply; default to |
sexObserved |
Sex of child (1 = Male; 2 = Female) |
firstPart |
Weight (kg; for WHZ and WAZ) or height (cm; for HAZ) |
secondPart |
Age (months; for HAZ and WAZ) or height (cm; for WHZ) |
index |
One of "wfh", "hfa", "wfa" (specifies the required index) |
Value
Numeric vector of z-scores of the anthropometric index selected
The function fails messily when secondPart is outside of the range
given in the WGS reference (i.e. 45 to 120 cm for height and 0 to 60 months
for age). It is up to you to check the ranges of your data.
The reference data for W/H assumes supine length is used for children with a standing height below 85cm
Heights should be specified in cm to the nearest mm (i.e. to 1 d.p.)
Ages should be specified in whole months
Weights should be specified in kg to available precision
The function requires reference data wgsData included in this package
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | # apply getWGS to first child in sample data anthro1
wazAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "weight",
secondPart = "age",
index = "wfa")
wazAll
hazAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "height",
secondPart = "age",
index = "hfa")
hazAll
whzAll <- getCohortWGS(data = anthro1,
sexObserved = "sex",
firstPart = "weight",
secondPart = "height",
index = "wfh")
whzAll
|
Example output
[1] -0.756055486 -1.390215032 -1.055978534 1.415750955 -2.677572422
[6] 1.492380502 -0.129877040 -0.023481593 -1.506473442 -1.543816296
[11] -2.874957122 -0.434972402 -1.038995403 -1.692818549 -1.312458980
[16] -2.210032596 -0.011892256 -0.909177616 -0.678398553 -0.947466947
[21] -2.499604250 -0.956596436 -1.654426862 -1.250527597 0.673357507
[26] 0.301563007 0.242613457 -2.786707088 -1.158206506 -1.154771825
[31] -1.355408197 -0.591349587 -4.149672176 -0.457487519 -0.743316691
[36] -1.697258365 -1.057450666 -0.188695078 -0.420957702 -2.210304143
[41] -1.305367153 -3.637781428 -0.606625256 -0.543604699 -1.591717797
[46] -1.747457376 -0.348033375 0.698961487 -0.744671297 0.189245725
[51] -1.481088556 -1.957531446 -1.311912614 0.301554844 -0.757890327
[56] -1.226363368 -1.274787811 -0.145532096 -1.304808185 -1.962091877
[61] -1.928346854 -1.045541559 -1.397289784 -1.481088556 -0.749372496
[66] -1.125037571 -2.776300420 -0.198826369 0.042195760 -0.521945326
[71] -1.465031581 0.854087182 -1.637194752 0.314098599 -0.812227665
[76] -1.002263141 -0.447220866 -1.172281706 -2.153122123 -1.818201583
[81] -1.131968739 -2.868805513 -0.735551227 -2.430221048 -2.872771868
[86] -0.943465717 -2.748662500 -2.550612731 -1.967110644 -3.365311234
[91] 0.741080763 0.233970396 -1.169615107 -1.543684754 -0.501936967
[96] -2.804976960 -1.895827835 -1.713427237 -1.872694403 -1.648348298
[101] -1.653569907 -0.664600505 -1.811316644 0.143249353 -3.229518785
[106] -2.583688246 -2.218952825 -0.286176123 -0.531412722 -1.673624449
[111] -1.909606074 -2.776300420 0.120104700 0.546563755 -0.879654589
[116] 0.124839647 -2.852646118 -3.083157784 -2.823920666 0.315261149
[121] 0.209088574 -2.476374011 -2.122715091 -0.318150340 -1.312458980
[126] -1.695358739 -0.902766193 -0.373410410 -1.112382697 -1.879607319
[131] -2.892609089 -1.513067916 -1.332513353 -1.551030431 -2.041633539
[136] -0.275693702 -0.944461306 -0.209682330 -2.238226801 -3.592510318
[141] -2.013488349 -0.084605129 -1.105513344 -1.531545257 0.617931505
[146] -2.743872367 -3.493445475 -1.153931285 -1.846156645 0.225663608
[151] -1.532200095 0.359795481 -2.952944021 -2.161430916 -0.910802060
[156] 0.552954267 -1.363669512 -0.878309363 -2.196964263 -1.859606282
[161] -0.844611315 0.131834686 -1.633907207 -0.141055654 -2.297881902
[166] -1.744077852 -2.404642192 -0.640953054 -3.805458627 -2.175400988
[171] -3.175229907 -4.951617316 1.060809620 -1.411766933 -0.086520173
[176] -1.059711075 -1.595718548 -1.304808185 1.683150739 0.287619430
[181] -2.466697289 -3.877673946 -3.715955123 -5.069451389 -1.292488999
[186] -2.132021716 0.097411137 -5.327514429 -2.024963023 -0.717288982
[191] -0.404520268 -1.577966855 -1.950532218 -3.048756422 -1.489593749
[196] -0.343636789 0.824983186 -1.399353926 -1.648172643 -4.367371436
[201] -3.433431026 -0.598778294 -2.601971260 -0.231187486 -1.957531446
[206] -3.681708972 -0.546363468 -3.068549949 -0.730357826 -1.144613582
[211] -1.997551142 -0.767387647 -1.074102109 -1.141639829 -2.245087848
[216] -1.751902365 -0.624691967 0.484916295 -0.154383628 -2.412799886
[221] 0.484102095 0.113248367 -1.819784699 -0.524863586 -2.241480963
[226] 0.232574778 -0.592830223 -4.408006457 -0.916470904 -0.270281822
[231] -3.362407730 1.659060555 -2.330062628 -0.025358589 -2.266557118
[236] -1.906475790 -0.162723565 -0.909685477 -3.015559997 -1.487433025
[241] -2.638696253 -0.328848959 -0.982682844 0.360114336 -2.351076974
[246] -0.878212777 -2.837649328 -2.201048684 -0.660124491 -1.367404192
[251] -1.464122373 -2.175835476 -1.775624791 -2.984881693 -1.713427237
[256] 1.830183855 -0.657047325 -2.102158382 -2.462376472 -1.896835294
[261] -0.406636636 -2.867595482 -0.449522123 -1.570105496 -2.671399103
[266] -1.246443716 -0.851668189 1.196571231 -0.359280565 -3.434281901
[271] -2.019348230 -2.311109808 0.715963423 -0.907679960 0.546544175
[276] -1.937404501 -0.697417462 -1.141639829 -0.549192808 -2.154154451
[281] -2.685855791 -1.855047344 -3.094781320 -0.337836304 -0.351805641
[286] -3.177111729 -2.629294375 -1.081084723 -1.937227979 -0.245582426
[291] -1.627670643 0.354050543 -2.798447133 -0.689401520 0.182498736
[296] -0.112542159 1.594478333 0.508973986 -3.108289096 -0.663817695
[301] -0.221651631 -0.034977312 -3.183148429 1.853282581 -0.792791017
[306] -1.576880204 -0.123516659 -2.845299102 -1.604658179 0.205987272
[311] -2.051523837 -2.301013361 -0.384022524 -0.230183057 -3.026927179
[316] -0.835240203 -2.462999394 -0.109811373 -1.960514990 -0.878309363
[321] -1.394810748 -2.351455627 -1.543684754 -0.715547505 -2.945522502
[326] -0.617988079 -0.272684214 -0.342539895 -2.852646118 -3.084644744
[331] -1.170014829 -0.093618819 -0.781064479 -0.498923459 -3.163469027
[336] -3.646604750 -1.049788802 1.624849713 -2.748662500 -2.972835153
[341] -0.434972402 0.062925270 -2.284855185 -2.747861331 -1.643124128
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[681] 1.1357396773 0.9231505259 -1.1518397589 0.4691624533 3.3700490910
[686] 4.2799830665 0.0048982575 0.4270913253 0.0514724353 0.3153233226
[691] -0.0908388955 1.1345990634 -0.1763354058 0.5198670342 0.2649421032
[696] -1.3105622482 -0.3270228611 -0.8885397601 0.9041033467 -2.3244983833
[701] 2.4215412279 3.0632545863 -1.0303890631 2.8730258495 0.9043725058
[706] 2.7311868970 -0.3368401088 -1.6492376784 0.5693944169 0.4223409670
[711] -0.5031664172 -0.6504227389 0.6456299628 -1.0530357982 2.1404312880
[716] -0.4693447928 0.2193041186 -1.9994236207 0.3161994359 -2.3288252089
[721] -2.2961887745 2.0306591253 2.4894878401 -1.8994569156 0.9690606083
[726] -1.2301981777 -0.1925274715 -0.4822936395 1.1233218699 1.0437503350
[731] -0.1666960175 0.8636371459 0.1279905369 -1.2116403633 -0.6070652901
[736] 2.4661066612 0.3547787355 -0.3468321123 0.3717413625 -0.3737450849
[741] -2.1058788758 3.3097165524 -0.7467483637 1.4791493712 0.9547210718
[746] -0.4143663154 -0.3189597765 1.3420393739 -1.2594086810 0.0305519032
[751] 2.9873742449 -0.1130092808 0.2660232281 1.3750965890 -1.0365537446
[756] -0.2015575947 -0.7498205958 -0.2509820301 0.5936935976 0.2459579103
[761] -0.4195047602 -0.7173137620 2.1173060473 0.0759366129 -0.3488559780
[766] 0.2190089694 0.7685427632 0.2841709259 -2.5422714886 -0.6999117191
[771] 1.0547214966 -0.9986273122 -1.1679100734 0.8217562084 0.2054257305
[776] 3.3194610343 -0.1147058043 -0.1075114710 0.8980072828 0.5983185785
[781] -1.4444749260 -0.8408941479 -0.3570955905 0.4091854843 1.3854175247
[786] -0.0823262342 0.0033053625 0.7227914443 2.1237894061 1.0008194769
[791] -1.2043076018 -0.4214335166 2.3481794063 0.4789702237 -0.5806151002
[796] 0.0095935352 0.5312461040 -0.2161992763 -0.0321136581 0.5691174290
[801] -1.8185177477 -1.7729238118 0.0086777138 0.6760042886 -0.5908980195
[806] -1.1883668056 0.2299997711 -0.5266637906 0.4529613076 -1.3849639827
[811] -3.8494997222 -1.9181144253 3.5139759675 -2.3958056927 2.6556186738
[816] -3.3060561647 0.5919350311 0.0696764244 0.2212809971 -0.4574372987
[821] 0.8195644973 1.2697263823 -0.6869443272 0.0553436773 0.6607270693
[826] 0.4042754336 1.2571283933 0.3533438175 1.6864468732 -0.0716847136
[831] 0.8410286460 -0.2613114217 -1.0595884630 -0.8721458396 -0.9744905824
[836] 0.8734250937 -1.0913054487 0.3760819718 -0.4877817014 -0.0801535222
[841] 0.5073620513 1.3754841800 -1.4955762507 -0.0607232209 -0.1294087257
[846] 0.1571206573 -1.7094134649 -0.7266681479 0.3639432785 -2.5314231177
[851] 0.3839549237 0.9274407231 -0.8266059321 -0.4540676077 -0.3998456629
[856] 1.5894866152 1.2755068495 -2.2325122392 0.0530392535 3.4311503879
[861] -0.4843870259 -0.4893118635 -0.7728203841 0.2968775111 0.1464355323
[866] 0.5874674600 0.1201329986 -0.7092773263 -0.4793195480 1.6312441373
[871] -1.0609871453 0.6494952423 -0.7374493814
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