overkillDB2: overkill the real doublets

In 13308204545/Chord: Chord

overkill the real doublets

Description

simulation training set is generated from quality singlet data after filter any doublets detected by any method

Usage

overkillDB2(
  seu,
  sce,
  doubletrate,
  seed = 1,
  k = 20,
  overkill = T,
  overkillrate = 1,
  overkilllist = overkilllist,
  adddoublt = adddoublt
)

Arguments

seu	the seurat object
sce	the SingleCellExperiment object
seed	random seed
k	k-means param k
overkill	weather use overkill
overkillrate	remove the top ?% doublet-liked cells of any methods' results.
overkilllist	a vector of cells to be remove in overkill
adddoublt	doubletrate of cells to be simulate

13308204545/Chord documentation built on June 14, 2022, 7:26 p.m.