finddistance: Clustering strains based on dissimilarity of SNPs
In 16xchen/Biomy: Novel tool to find genetic factors that drive a set of traits
Description
Usage
Arguments
Value
Author(s)
Description
One drendrogram for every 100 snps
Usage
1
finddistance(snpdata, start = 1, strain.names)
Arguments
snpdata
SNP data downloaded from opensource databases such as <http://msub.csbio.unc.edu/>or <http://www.informatics.jax.org/javawi2/servlet/WIFetch?page=snpQF>
start
starting row of SNP, default is 1
strain.names
a character vector of matching strain names
Value
an object of class dendrogram
Author(s)
Xingyao Chen
16xchen/Biomy documentation built on May 5, 2019, 10:39 a.m.
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Description Usage Arguments Value Author(s)
Description
One drendrogram for every 100 snps
Usage
1 | finddistance(snpdata, start = 1, strain.names)
|
Arguments
snpdata |
SNP data downloaded from opensource databases such as <http://msub.csbio.unc.edu/>or <http://www.informatics.jax.org/javawi2/servlet/WIFetch?page=snpQF> |
start |
starting row of SNP, default is 1 |
strain.names |
a character vector of matching strain names |
Value
an object of class dendrogram
Author(s)
Xingyao Chen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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