dm3_BspHI_100000: Genomic features for dm3 genome and BspHI restriction enzyme...

In 4DGenome/hicfeatures: Genomic features for HI-C experiments

Description

A data.frame containing the mappability, restriction enzyme density and CG proportion of the dm3 genome and BspHI restriction enzyme in 100 Kbp bins

Usage

dm3_BspHI_100000

Format

A data frame with 1309 rows and 5 variables:

chr:

chromosome

map:

mappability as computed by gem

res:

restriction enzyme density per 1 Kbp computed by Biostrings::matchPattern()

cg:

cg content as computed by bedtools

bin:

genomic bin with the format chromosome:start_position

pos:

start postion of the genomic bin

4DGenome/hicfeatures documentation built on May 12, 2019, 10:28 p.m.