In A1exanderAlexeyuk/OncologyRegimenFinder: Oncology Regimen Finder

Changes

• Rebuilding the code structure, dividing functions into blocks
• Translated SQL form only Redshift to PostgreSQL and BigQuery
• Generally has been changed an approach of ingredient finding (was ATC classification concept_id) => HemOnc relationship_idS: 'Has AB-drug cjgt Rx', 'Has cytotox chemo Rx', 'Has endocrine tx Rx', 'Has immunotherapy Rx', 'Has pept-drg cjg Rx', 'Has radiocjgt Rx', 'Has radiotherapy Rx', 'Has targeted tx Rx', 'Has antineopl Rx', 'Has immunosuppr Rx' with filtering supportive drugs and some very specific ones for some diseases and generally not specific (Amoxicillin, Doxycycline, Parvastatine etc.)
• Added option include or not to include corticosteroids
• Added option create or not to create a vocabulary
• Added option to use HemOnc as a source of ingredients or internal csv
• Added ETL option to delete and insert (parameterized arguments) info in episode and episode_event table
• Added option to put custom concept_ids for algo analysis

A1exanderAlexeyuk/OncologyRegimenFinder documentation built on Feb. 10, 2023, 10:11 a.m.