README.md

In ABMI/GEMINI: GEMINI for comparing with two institution data

GEMINI

Gemini means 'GEneral exaMINing and visualizing application for paired Institution'. It uses a connection of DB for extract a part of CDM data and makes rds files where you want.

TABLE required in CDM

PERSON

DEATH

VISIT OCCURRENCE

CONDITION OCCURRENCE

DRUG EXPOSURE

DRUG ERA

(OBSERVATION_PERIOD)

HOW TO USE

Here are some of the details.

1. Requirement

2. Install Java SDK (developed in 8 Update 181)

3. Install R packages "devtools", "shinyjs"

4. Install Rtools and set Rtools PATH

5. Install GEMINI

6. Download GEMINI R project
7. Run "GEMINI.Rproj"

8. go to "Build" tap - click "Install and Restart"

9. Run Gemini

gemini_run()

1. description
2. Create rds file : This process creates rds files zipped.
3. gemini : Register the zip file of the institution you want to compare and press the Start button.

If R studio encoding is CP949 (Window default), don't open gemini_md.Rmd file until change R studio encoding to UTF-8. If not, it occurs encoding crashes.

Poster

ABMI/GEMINI documentation built on Feb. 16, 2020, 10:30 p.m.