gene.class: Detect the most discriminant genes using circRNA-impact as...

In ABuratin/CircTarget: Pipeline for study interaction and association between circular and linear RNA

Detect the most discriminant genes using circRNA-impact as stratificator of samples

Description

Detect the most discriminant genes using circRNA-impact as stratificator of samples

Usage

gene.class(
  circ_idofinterest,
  circRNAs,
  linearRNAs,
  group,
  colData,
  covariates,
  th.corr
)

Arguments

circ_idofinterest	circRNA-impact ID
circRNAs	normalized read count of circRNAs
linearRNAs	row read count of gene
colData	coldata dataframe
covariates	additinal covariates for batch effect
th.corr	correlation thershold in clean collinear genes

Value

list of discriminating genes, n. genes selected, data.frame of ranked genes

ABuratin/CircTarget documentation built on July 6, 2022, 9:06 a.m.