Files in AJEinstein/SMITE
Significance-based Modules Integrating the Transcriptome and Epigenome
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/SMITE-generics.R
R/SMITE-internal.R
R/SMITE-plot.R
R/SMITE-print.R
R/SMITE-show.R
R/SMITE.R
data/Reactome.Symbol.Igraph.rda
data/curated_expressiondata.rda
data/datalist
data/genes_for_conversiontest.rda
data/hg19_genes_bed.rda
data/histone_h3k4me1.rda
data/methylationdata.rda
data/test_annotation_score_data.rda
inst/NEWS
inst/extdata/hg19_symbol_hpaii.sites.inbodyand2kbupstream.bed.gz
man/.Rapp.history
man/Reactome.Symbol.Igraph.Rd
man/SMITE-package.Rd
man/addShadowText.Rd
man/annotateExpression.Rd
man/annotateModification.Rd
man/convertGeneIds.Rd
man/curated_expression.Rd
man/extractExpression.Rd
man/extractGOseq.Rd
man/extractModification.Rd
man/extractModules.Rd
man/extractScores.Rd
man/genes_for_conversiontest.Rd
man/hg19_gene_bed.Rd
man/highScores.Rd
man/histone_h3k4me1.Rd
man/makePvalueAnnotation.Rd
man/makePvalueObject.Rd
man/methylationdata.Rd
man/normalizePval.Rd
man/plotCompareScores.Rd
man/plotDensityPval.Rd
man/plotModule.Rd
man/removeModification.Rd
man/runBioNet.Rd
man/runGOseq.Rd
man/runSpinglass.Rd
man/scorePval.Rd
man/stoufferTest.Rd
man/test_annotation_score_data.Rd
vignettes/SMITE.Rmd
