eQTL_stats: List of whole blood eQTL summary statistics overlapping a...
In AbbVie-ComputationalGenomics/POEMColoc: Implement POEM colocalization method
Description
Usage
Format
Source
Examples
Description
GTEx whole blood eQTL with summary statistics overlapping chr19:10600418.
A list of POEMColoc input datasets with the names of the list giving the gene.
Because full summary statistics were available, we used coefficients and variannces.
We supply sdY = 1 because the values have been standardized and hg19 positions.
Usage
1
data("eQTL_stats")
Format
The format is:
List of 72 with the following format for each element
$ ensembl_id:List of 7
..$ type : "cc" or "quant", here "quant"
..$ sdY : 1
..$ MAF : vector of minor allele frequency at pos
..$ beta : vector of beta estimate at pos
..$ varbeta: vector of variance of beta estimate at pos
..$ pos : position
..$ chr : chromosome
Source
GTEx v7. GTEx Consortiumet al., “The genotype-tissue expression (GTEx) pilot analysis: Multitissue generegulation in humans,”Science, vol. 348, no. 6235, pp. 648–660, 2015.
Examples
1
AbbVie-ComputationalGenomics/POEMColoc documentation built on May 20, 2020, 12:32 a.m.
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Description Usage Format Source Examples
Description
GTEx whole blood eQTL with summary statistics overlapping chr19:10600418. A list of POEMColoc input datasets with the names of the list giving the gene. Because full summary statistics were available, we used coefficients and variannces. We supply sdY = 1 because the values have been standardized and hg19 positions.
Usage
1 | data("eQTL_stats")
|
Format
The format is: List of 72 with the following format for each element $ ensembl_id:List of 7 ..$ type : "cc" or "quant", here "quant" ..$ sdY : 1 ..$ MAF : vector of minor allele frequency at pos ..$ beta : vector of beta estimate at pos ..$ varbeta: vector of variance of beta estimate at pos ..$ pos : position ..$ chr : chromosome
Source
GTEx v7. GTEx Consortiumet al., “The genotype-tissue expression (GTEx) pilot analysis: Multitissue generegulation in humans,”Science, vol. 348, no. 6235, pp. 648–660, 2015.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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