getResultsIntersection: getResultsIntersection

In AbbVie-External/OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

getResultsIntersection

Description

getResultsIntersection

Usage

getResultsIntersection(
  study,
  modelID,
  anchor,
  mustTests,
  notTests,
  sigValue,
  operator,
  column
)

Arguments

study	An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.
modelID	Filter by modelID
anchor	The primary testID to filter the results
mustTests	The testIDs for which a featureID (or termID for enrichment) must pass the filters
notTests	The testIDs for which a featureID (or termID for enrichment) must not pass the filters. In other words, if a featureID passes the filter for a testID specified in notTests, that featureID is removed from the output
sigValue	The numeric significance value to use as a cutoff for each column
operator	The comparison operators for each column, e.g. "<"
column	The columns to apply the filters

Value

Returns a data frame with the results, similar to getResultsTable. Only rows that pass all the filters are included. The new column Set_Membership is a comma-separated field that includes the testIDs in which the featureID passed the filters.

See Also

getResultsTable

AbbVie-External/OmicNavigator documentation built on March 5, 2025, 9:54 p.m.