README.md

In AbhivKoladiya/CytoDataViz: Cytometry data visualization package

CytoDataViz- R package for cytometry data visualization and clustering

Fucntions

1. fplot Plot expression using ggridges

2. e.g. fplot(flowSet/flowFrame, all_markers/specified_marker)

3. emb Gererate clusters using EmbedSOM algorithm

4. e.g. emb(flowSet)

5. cplot Plot clusters and metacluster plot using ggplot

6. e.g. cplot(output_from_emb)

7. plotlabels Assign user specified name to clusters.

8. e.g. plotlabels(output_from_emb)

9. hplot Plot heat maps for each markers

10. e.g. hplot(output_from_emb, specified_columns)

AbhivKoladiya/CytoDataViz documentation built on June 23, 2019, 3:31 a.m.