Man pages for Acanthiza/envCluster
Create Clusters From Records of Taxa
| calc_wss | Calculate within cluster sum of squares |
| decorate_dend | Make a dendogram |
| make_clusters | Apply clustering algorithms |
| make_clusters_explore | Explore clusters |
| make_dend | Make a dendogram |
| make_freq_df | Proportion of sites and clusters with at least one taxa in... |
| make_gap_df | Calculate gap statistic for a clustering |
| make_ind_val_df | Create a dataframe of indicator values for a clustering |
| make_knn_clust | Make clusters using mstknnclust::mst.knn |
| make_neigh_text | Make text to describe silhouette. |
| make_sil_df | Create a dataframe of silhouette widths for a clustering |
| make_sil_plot | Make a silhouette plot from a silhouette dataframe |
| make_summary_df | Simple summary of a clustering. |
| make_wide_df | Make a wide (usually site * taxa) data frame |
| pipe | Pipe operator |
