calc_wss: Calculate within cluster sum of squares

In Acanthiza/envCluster: Create Clusters From Records of Taxa

Calculate within cluster sum of squares

Description

Calculate within cluster sum of squares

Usage

calc_wss(
  clust_df,
  dist_obj = NULL,
  dist_mat = NULL,
  clust_col = "clust",
  do_sample = FALSE
)

Arguments

clust_df	Dataframe with column of cluster membership.
dist_obj	Distance object from which clusters were generated.
dist_mat	Result from as.matrix(dist_obj), or equivalent. Required if dist_obj is not supplied.
clust_col	Character. Name of column in clust_df that contains the clusters.
do_boot	Logical. Sample clust_col (without replacement) before calculation. As step in gap-statistic calculation.

Value

Dataframe of within group sum-of-squares for each cluster.

Acanthiza/envCluster documentation built on July 16, 2025, 10:17 p.m.