make_eco_desc: Make a description for an ecosystem

In Acanthiza/envEcosystems: Create Ecosystem Definitions

Make a description for an ecosystem

Description

Make a description for an ecosystem

Usage

make_eco_desc(
  bio_df,
  clust_df,
  bio_wide = NULL,
  bio_ind = NULL,
  clust_col = "cluster",
  context,
  cov_col = "use_cover",
  taxa_col = "taxa",
  lustr,
  taxonomy,
  use_prop_thresh
)

Arguments

bio_df	Dataframe with biological information.
clust_df	Dataframe with cluster membership and join columns to bio_df.
bio_wide	Dataframe of taxa by sites.
bio_ind	Dataframe of indicator taxa per class. Output from envCluster::make_ind_val_df. Will be created if not supplied.
clust_col	Character name of column in clust_df that defines clusters.
context	Character name of columns in bio_df that define the context.
cov_col	Character name of column in bio_df that contain numeric cover values.
taxa_col	Character name of column with taxa.
lustr	Dataframe containing structural information.
taxonomy	Dataframe containing indigenous status of taxa in bio_df
use_prop_thresh	Numeric. Threshold (proportion) for taxa to include in description. Taxa that occur in more than use_prop_thresh proportion of sites in the cluster will be included in the description.

Acanthiza/envEcosystems documentation built on May 21, 2024, 6:20 p.m.