| AssociteNodes | Title |
| BootStrapCurve | Title |
| CompareAcrossData | Title |
| DistanceGraphCor | Assess quality of the fitting via correlation |
| EstimateProliferativeCell | Estimate proliferative cells |
| ExtractStages | Title |
| FilterData | Filter expression matrix |
| FitCircle | Fit a circle to the data |
| FitStagesCirc | Title |
| GetGenesWithPeaks | Title |
| PlotBoot | Plot bootstrapped data |
| PlotOnPseudotime | Title |
| PlotOnStages | Title |
| ProjectAndCompute | Title |
| RescaleStagePT | Title |
| SelectGenes | Title |
| SelectGenesOnGraph | Construct and optimize cycle |
| StageWithPeaks | Title |
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