SelectGenesOnGraph: Construct and optimize cycle

In Albluca/ElPiCycle: An r package to study cell cycle in RNA-Seq data

Description

Construct and optimize cycle

Usage

SelectGenesOnGraph(DataSet, StartSet, Categories = NULL,
  OutThr.Gene_Expression = 3, OutThr.Gene_Count = 3,
  OutThr.Gene_Space = 3, LogSpace = TRUE, NonG0Cell = NULL,
  EstProlif = "MeanPerc", QuaThr = 0.5, MinProlCells = 50,
  Do.LogPC = TRUE, Do.PCA = TRUE, Center.PCA = FALSE, VarThr = 0.99,
  nNodes = 40, GraphType = "Circle", PlanVarLimit = 0.85,
  PlanVarLimitIC = 0.9, InitStructNodes = 20,
  GeneSelMode = "SmoothOnCircleNodes", AddGenePerc = 5, VarQuantExp = 0.5,
  SelThr1 = 0.95, SelThr2 = 0.99, MadsThr = 1, SelGeneThr = NULL,
  SelGeneAggFun = median, Span = 0.5, nCores = 1, Title = "")

Arguments

Title

Albluca/ElPiCycle documentation built on May 27, 2019, 8:43 a.m.