SelectGenesOnGraph: Construct and optimize cycle

In Albluca/Pricecycle: r package to study cell cycle in RNA-Seq data

Description

Construct and optimize cycle

Usage

SelectGenesOnGraph(DataSet, StartSet, VarThr = 0.99, nNodes = 40,
  Log = TRUE, Categories = NULL, Filter = TRUE, OutThr = 5,
  PCAFilter = TRUE, OutThrPCA = 3, GraphType = "Circle",
  PlanVarLimit = 0.85, PlanVarLimitIC = 0.9, MinBranDiff = 3,
  InitStructNodes = 20, ForceLasso = FALSE, EstProlif = "MeanPerc",
  QuaThr = 0.5, NonG0Cell = NULL, DipPVThr = 1e-04, MinProlCells = 50,
  PCACenter = TRUE, PCAProjCenter = TRUE, PlotDebug = FALSE,
  PlotIntermediate = FALSE, AddGenePerc = 5, SelThr1 = 0.95,
  SelThr2 = 0.99, MadsThr = 1, GeneSelMode = "CV", SelGeneThr = NULL,
  RatExp = 0.5)

Arguments

MadsThr

Albluca/Pricecycle documentation built on May 23, 2019, 9:35 p.m.