Files in AleSR13/refsampr
Making QC report from Reference Samples (analyzed with Juno pipeline)
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/parsing_raw_data.R
R/plots.R
R/sysdata.rda
README.Rmd
README.md
data-raw/genera_accepted.csv
data-raw/include_genera_accepted_in_pkg.R
inst/rmd/Report_RefSamples.Rmd
inst/testdata/210120_RunResults/CheckM/CheckM_combined/CheckM_report.tsv
inst/testdata/210120_RunResults/QUAST/report.tsv
inst/testdata/210120_RunResults/QUAST/transposed_report.tsv
inst/testdata/210120_RunResults/bbtools_scaffolds/bbtools_summary_report.tsv
inst/testdata/210120_RunResults/example_history_data.csv
man/extract_bbtools.Rd
man/extract_checkm.Rd
man/extract_quast.Rd
man/find_tool_reports.Rd
man/get_accepted_criteria.Rd
man/get_run_date.Rd
man/make_refsamp_report.Rd
man/merging_by_sample.Rd
man/plot_time_metrics.Rd
man/read_tsv_report.Rd
refsamp.Rproj
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/testthat.R
tests/testthat/test-parsing_raw_data.R
tests/testthat/test-plots.R
