make_refsamp_report: Make reference samples report

In AleSR13/refsampr: Making QC report from Reference Samples (analyzed with Juno pipeline)

Make reference samples report

Description

Make reference samples report

Usage

make_refsamp_report(input_dir, output_report, history_data = NULL, run_name)

Arguments

input_dir	Path to directory with results from Juno pipeline.
output_report	Desired file name of the output report (.html extension).
history_data	Path to history_data. If not provided, a history_data.csv file will be created in the same directory where the output_report is.
run_name	Collection name of Juno output as assigned by iRODS in previous pipeline.It MUST start with the date in the format "yymmdd".

Value

Html report (file name taken from output_report parameter) and a csv file with the history data.

AleSR13/refsampr documentation built on May 30, 2022, 5:42 a.m.