README.md

In AlenLove/SEIRtest: Selector-Embedded Iterative Regression

SEIR

Selector-Embedded Iterative Regression method for Genome-Wide Association Study

SEIR: Selector-Embedded Iterative Regression

A fast and extremely powerful R package for GWAS

Written by Mengjin Zhu & GuangLiang Zhou

Last update: Sep 27, 2021

Installation

install.packages("devtools")

devtools::install_github("AlenLove/SEIRtest")

Demo Data

SEIR R version only support numeric data type

Usage

library(SEIR)

# genotype information data

data(map)

# genotype data

data(geno)

# phenotype data

data(phe)

# association analysis

SEIR(Y=phe,X=geno,GM=map,CV=NULL,maxStep=10, selector="stepwise",fun.selection="fastLm", extraction="min",X.check="FALSE",chunk.num = NULL, file.output=FALSE,plot.style="SEIR",cutOff=0.05)

# more features

More parameters explained [here]

Issues

Bugs could be reported [here]

The license notice

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details

Author

Mengjin zhu ([e-mail])

AlenLove/SEIRtest documentation built on Dec. 17, 2021, 7:49 a.m.