Man pages for AlexDiru/rsurfer
Manipulating 'Freesurfer' Generated Data

addrandomdiagnosisAdd Random Diagnosis
addrandomgenderAdd Random Gender
adni.mergewithfreesurferoutputADNI Merge With 'Freesurfer' Output
adni.printfilelocationsADNI Print File Locations
adni.setfilesADNI Set Files
caddementia.mergewithfreesurferoutputCAD Dementia Merge With 'Freesurfer' Output
caddementia.printfilelocationsCAD Dementia Print File Locations
caddementia.setfilesCAD Dementia Set Files
eliminateabnormalitiesEliminate Abnormal Rows and Columns
eliminateabnormalities.colsEliminate Abnormal Columns
eliminateabnormalities.rowsEliminate Abnormal Rows
export.forKNIMEExport Data For KNIME
extract.brain.featuresExtract All MRI Brain Features
extract.bynameExtract Features By Group Name
extract.corticalExtract Cortical Fields
extract.corticalsurfaceareasExtract Cortical Surface Areas
extract.corticalthicknessesExtract Cortical Thicknesses
extract.corticalthicknessstddevsExtract Cortical Thickness Standard Deviations
extract.corticalvolumesExtract Cortical Volumes
extract.hippocampalvolumesExtract Hippocampal Volumes
extract.subcorticalvolumesExtract Subcortical Volumes
extract.volumesExtract Cortical Thicknesses
fsdirectorycheck'Freesurfer' Subject Directory Check
fsimport'Freesurfer' Import (Serialise)
fsimport.listfields'Freesurfer' Import (List Fields)
fsimport.serialise'Freesurfer' Import (Serialise)
generaterandomsubjectsGenerate Random Subjects
getfieldgroupGet Field Group of Feature
getfshomeGet 'Freesurfer' Home
getfsversionGet 'Freesurfer' Version
get.hemisphere.sideGet Hemisphere Side
getnamesofareasGet Names of Areas
getnamesofthicknessesGet Names of Thicknesses
getnamesofvolumesGet Names of Volumes
get.opposite.hemisphere.measurementGet Opposite Hemisphere Measurement
is.corticalIs Feature Cortical
is.corticalareaIs Feature Cortical Area
is.corticalthicknessIs Feature Cortical Thickness
is.corticalthicknessstdIs Feature Cortical Thickness Standard Deviation
is.corticalvolumeIs Feature Cortical Volume
isfsfeatureIs Feature Created by 'Freesurfer'
is.hippocampalvolumeIs Feature Hippocampal Volume
is.subcorticalvolumeIs Feature Subcortical Volume
ixi.mergewithfreesurferoutput'IXI' Merge Study Information With 'Freesurfer' Output
ixi.setfileIXI Set File
normaliseNormalise
normalise.listfieldgroupsList Normalisation Field Groups
normalise.listmethodsList Normalisation Methods
removeabnormalrowsandcolsRemove Abnormalities
rsurfer-packageRSurfer
searchforabnormalities.colsSearch For Abnormalities (Columns)
searchforabnormalities.rowsSearch For Abnormalities (Rows)
setfshomeSet 'Freesurfer' Home
subjectDistributionTableCreate Subject Distribution Table
subjectDistributionTableToLatexConvert Subject Distribution Table To LaTeX
test.fieldextractionTest Field Extraction
test.importingTest Importing
test.normalisationTest Normalisation
AlexDiru/rsurfer documentation built on Feb. 19, 2018, 4:05 p.m.