AnoVaOMICS: Automatic calculation of an ANOVA for OMICS data
In AlexINSERM/Sci.ADS: Helpful functions regularly used in INSERM U1193
AnoVaOMICS R Documentation
Automatic calculation of an ANOVA for OMICS data
Description
Automatic calculation of an ANOVA for OMICS data
Usage
AnoVaOMICS(df, grp, threshold = 5, method.Adj = "BH")
Arguments
df
dataframe (variable in columns, samples in rows)
grp
sample grouping column
threshold
threshold for significance (expressed as a percentage)
method.Adj
method used for multiple comparison adjustment ("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none")
Value
dataframe with significant variables
Examples
data(LIHC_pnas)
# subset of TCGA data from LIHC
res<-AnoVaOMICS(LIHC_pnas, iHCC, threshold=1) # 1% threshold
AlexINSERM/Sci.ADS documentation built on March 24, 2024, 11:26 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| AnoVaOMICS | R Documentation |
Automatic calculation of an ANOVA for OMICS data
Description
Automatic calculation of an ANOVA for OMICS data
Usage
AnoVaOMICS(df, grp, threshold = 5, method.Adj = "BH")
Arguments
df |
dataframe (variable in columns, samples in rows) |
grp |
sample grouping column |
threshold |
threshold for significance (expressed as a percentage) |
method.Adj |
method used for multiple comparison adjustment ("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none") |
Value
dataframe with significant variables
Examples
data(LIHC_pnas)
# subset of TCGA data from LIHC
res<-AnoVaOMICS(LIHC_pnas, iHCC, threshold=1) # 1% threshold
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.