Files in AliSajid/drugfindR
Investigate iLINCS for candidate repurposable drugs
.Rbuildignore
.bumpversion.cfg
.cz.toml
.gitattributes
.github/.gitignore
.github/workflows/create_github_release.yaml
.github/workflows/rworkflows.yml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
.markdownlint.json
.markdownlintignore
.pre-commit-config.yaml
.zenodo.json
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/consensusConcordants.R
R/drugfindR-package.R
R/filterSignature.R
R/getConcordants.R
R/getSignature.R
R/investigateSignature.R
R/investigateTarget.R
R/prepareSignature.R
R/sysdata.rda
R/utilities.R
README.Rmd
README.md
codecov.yml
codemeta.json
data-raw/metadata_tables.R
inst/WORDLIST
inst/extdata/dCovid_diffexp.tsv
inst/script/dCovid_diffexp.R
man/consensusConcordants.Rd
man/dot-ilincsBaseUrl.Rd
man/dot-return_library.Rd
man/dot-return_user_agent.Rd
man/dot-validateLibrary.Rd
man/drugfindR-package.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/filterSignature.Rd
man/getConcordants.Rd
man/getSignature.Rd
man/investigateSignature.Rd
man/investigateTarget.Rd
man/loadMetadata.Rd
man/prepareSignature.Rd
man/stopIfInvalidLibraries.Rd
man/targetRename.Rd
man/validateLibraries.Rd
raw/LINCS-KD-Metadata.xls.gz
raw/LINCS-OE-Metadata.xls.gz
raw/LINCS-Perturbagen-Metadata.xls.gz
raw/l1000_genes.tsv.gz
renovate.json
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
renv/settings.json
tests/cassettes/.gitkeep
tests/cassettes/test_invalid.yml
tests/testthat.R
tests/testthat/fixtures/concordantsCp.RDS
tests/testthat/fixtures/concordantsCpPaired.RDS
tests/testthat/fixtures/concordantsOe.RDS
tests/testthat/fixtures/exampleSignature.RDS
tests/testthat/helper-vcr.R
tests/testthat/helpers.R
tests/testthat/test-consensus_concordants.R
tests/testthat/test-filter_signature.R
tests/testthat/test-get_concordants.R
tests/testthat/test-get_signature.R
tests/testthat/test-prepare_signature.R
utilities/bump-version.sh
utilities/create_tag.sh
utilities/rename-package.R
utilities/update-changelog.sh
vignettes/.gitignore
vignettes/drugfindR.Rmd
