load_GAPIT_GWAS_all: Load GAPIT Results Tables

In Alice-MacQueen/gapit2mashr: Convert GAPIT Output Files to mashr Input Data Frames

Description

Given a path to a directory and a specific phenotype, this function reads in GAPIT output csvs and returns a list of these data frames.

Usage

load_GAPIT_GWAS_all(path = ".", phenotype, model = "CMLM")

Arguments

path	File path to the csv files that GAPIT has created, a character string.
phenotype	Phenotype name used in GAPIT, a character string.
model	Model type used in GAPIT runs, a character string.

Value

A list containing the five GAPIT csv outputs: PRED, GWAS.Results, Df.tValue.StdErr, ROC, and Log.

Note

To create a vector of all phenotype names, use the gapit_phenotypes_in_folder function.

Alice-MacQueen/gapit2mashr documentation built on May 9, 2019, 2:32 p.m.