A dataset consisting of descriptive annotation data for all 1809 cells characterized in Tasic, et al. (2016).
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A Data Frame with 11 columns and 1809 rows
An ID that uniquely corresponds to a single cell. Matches column names in tasic_2016_counts and tasic_2016_rpkm
Short identifier for the Cre line that the cell was collected from
Full name of the first Cre line used to generate the mouse line
Full name of the second Cre line used to generate the mouse line, if used. If not, it will be blank ("")
Full name of the Cre-responsive reporter used to generate the mouse line
Layers of VISp that were dissected. upper corresponds to L1-4; lower to L5-6
FACS gate used to collect the cell. tdTomato positive cells expressed tdTomato; tdTomato negative cells had low or no tdTomato fluorescence
Flag for cells that did or did not pass initial QC checks. "Y" or "N".
Broad classification of cell types
Flag for cells that are assigned to "core" or "intermediate" cell type identity based on random forest analysis
The primary cell type assigned to each cell
If a cell is intermediate, the secondary cell type assigned to each cell. If the cell is core, this will be blank ("")
A unique short cell identifier that is used in the Allen Brain Institute Vignette at http://casestudies.brain-map.org/celltax
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