data-expression: Sample expression matrices for CSD
In AlmaasLab/csdR: Differential gene co-expression
data-expression R Documentation
Sample expression matrices for CSD
Description
Sample expression matrices of thyroid gland tissue for
thyroid cancer patients and healthy individuals. These datasets
were pre-processed by Gulla et al. (2019).
Due to size requirements, only 1000 randomly selected genes
are provided in the dataset. Number of samples are 399 and 504
in the healthy controls and the sick samples, respectively.
Usage
data(normal_expression)
data(sick_expression)
Format
Numeric matrices of normalized gene expression.
Genes are in columns, whereas samples are in rows.
Source
For the expression matrix for healthy individuals,
GenotypeTissue Expression (GTEx) V7.
For the thyroid cancer patients,
the data are obtained for the Thyroid Cancer
project (THCA) from The Cancer Genome Atlas (TCGA).
References
Gulla, Almaas, Eivind, & Voigt, André (2019).
An integrated systems biology approach to investigate
transcriptomic data of thyroid carcinoma.
NTNU.
http://hdl.handle.net/11250/2621725
AlmaasLab/csdR documentation built on Dec. 9, 2022, 6:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| data-expression | R Documentation |
Sample expression matrices for CSD
Description
Sample expression matrices of thyroid gland tissue for thyroid cancer patients and healthy individuals. These datasets were pre-processed by Gulla et al. (2019). Due to size requirements, only 1000 randomly selected genes are provided in the dataset. Number of samples are 399 and 504 in the healthy controls and the sick samples, respectively.
Usage
data(normal_expression) data(sick_expression)
Format
Numeric matrices of normalized gene expression. Genes are in columns, whereas samples are in rows.
Source
For the expression matrix for healthy individuals, GenotypeTissue Expression (GTEx) V7. For the thyroid cancer patients, the data are obtained for the Thyroid Cancer project (THCA) from The Cancer Genome Atlas (TCGA).
References
Gulla, Almaas, Eivind, & Voigt, André (2019). An integrated systems biology approach to investigate transcriptomic data of thyroid carcinoma. NTNU. http://hdl.handle.net/11250/2621725
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.