AUDPC: Area under disease progress curve

In AlvesKS/epifitter: Analysis and Simulation of Plant Disease Progress Curves

Area under disease progress curve

Description

Calculates the area under disease progress curves.

Usage

AUDPC(time, y, y_proportion = TRUE, type = "absolute")

Arguments

time	A vector object of time.
y	A vector object of disease intensity.
y_proportion	Logical. If disease intensity is proportion (TRUE) or percentage(FALSE).
type	Set if is absolute or relative AUDPC. type = "absolute" is default.

Author(s)

Kaique dos S. Alves

References

Madden, L. V., Hughes, G., and van den Bosch, F. 2007. The Study of Plant Disease Epidemics. American Phytopathological Society, St. Paul, MN.

Examples

epi =  sim_logistic(N = 30, y0 = 0.01,dt = 5, r = 0.3, alpha = 0.5, n = 1)
AUDPC(time = epi$time, y = epi$y, y_proportion = TRUE)

AlvesKS/epifitter documentation built on Jan. 26, 2025, 3:23 a.m.