| altregress | Select alternative method for control value regression |
| bamf_prune | Binned Anomaly, Mitigate and Fit Pruning |
| bioprune | Prune data based on biological cutoffs |
| checkdir | Check directory naming |
| corplot | Test for correlation among traits in a data frame and output... |
| prune_outliers | Prune based on outliers |
| read_data | Read plate data |
| regress | Regress control values or assay values from experimental... |
| remove_contamination | Remove contamination from plate data frame or list of plate... |
| runPCA | Perform principal component analysis on traits |
| sumplate | Summarize a plate or multiple plates |
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