sumplate: Summarize a plate or multiple plates

In AndersenLab/easysorter: A Package to Read, Process, and Manage Data from the Andersen Lab's Worm Sorter

Description

This function takes a list of plates as input and returns a single data frame with data summarized for each well/condition pair. As input, this function takes a two element list, with the first element being a data frame consisting of all of the score plates to be summarized. The second element in the list should be a data frame consisting of all of the setup plates to be summarized, from which the number sorted to each well will be extracted.

Usage

sumplate(plates, picked_plates = FALSE, directories = FALSE,
  quantiles = FALSE, log = FALSE, ends = FALSE, long = FALSE)

Arguments

plates	A single data frame of all data or a list consisting of all of the score plates in the first element and the setup plates in the second elements. Alternatively, a list of data frames can be supplied (the output from read_data if multiple directories are supplied) if the directories flag is set to TRUE.
directories	Set to TRUE if the supplied data comes from mutliple directories (e.g. the RIAILs1 or RIAILs2 data). Defaults to FALSE.
quantiles	Boolean indicating whether or not quantile values (q10, q25, q75, q90) should be included in the summarized data frame. Defaults to FALSE.
log	Boolean indicating whether or not log-transformed values should be included in the summarized data frame. Defaults to FALSE.
ends	Boolean indicating whether or not min and max values should be included in the summarized data frame. Defaults to FALSE.
long	Boolean stating whether to output the data in long format.

AndersenLab/easysorter documentation built on Nov. 27, 2020, 4:26 a.m.