wb_variants: Wormbase gene variants
In AndersenLab/wormbase-api:
Description
Usage
Arguments
Value
Description
Using a given gene name, the Wormbase REST API is queried to create a data
frame containing information on the different variants of the gene, and the
associated strains.
Usage
1
wb_variants(gene)
Arguments
name
of C. elegans gene to search for.
Value
data frame of nine columns: Wormbase variant ID, allele name, isoform ID,
locations (exon, intron, etc), molecular change (deletion, subsitution, etc),
gene effect (missense, nonsense, etc), amino acid change, amino acid position,
and associated strain. All empty fields contain NA as a character. If the gene
is not found in C. elegans, an empty data frame will be returned.
AndersenLab/wormbase-api documentation built on May 5, 2019, 4:57 a.m.
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Description Usage Arguments Value
Description
Using a given gene name, the Wormbase REST API is queried to create a data frame containing information on the different variants of the gene, and the associated strains.
Usage
1 | wb_variants(gene)
|
Arguments
name |
of C. elegans gene to search for. |
Value
data frame of nine columns: Wormbase variant ID, allele name, isoform ID, locations (exon, intron, etc), molecular change (deletion, subsitution, etc), gene effect (missense, nonsense, etc), amino acid change, amino acid position, and associated strain. All empty fields contain NA as a character. If the gene is not found in C. elegans, an empty data frame will be returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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