Bayesian Trophic Position Calculation with Stable Isotopes

Bilagay | Data frame containing stable isotope values of Bilagay. |

compareTwoDistributions | Function to compare two distributions and test a hypothesis,... |

credibilityIntervals | Plot credibility intervals and central tendency descriptor... |

extractIsotopeData | Extract stable isotope data from a data frame |

Finnish_Lakes | Data frame of food webs in Inari and Kilpis Lakes (Finland) |

fromParallelTP | Function to extract raw data from parallel calculations of... |

generateTPData | A function to generate random stable isotope data for trophic... |

getPosteriorMode | Function to get mode from a posterior distribution |

jagsBayesianModel | Returns a JAGS-based Bayesian model to use within... |

jagsOneBaseline | Defines a jags Bayesian model to fit a single baseline... |

jagsTwoBaselines | Defines a jags Bayesian model to fit a two baselines trophic... |

jagsTwoBaselinesFull | Defines a jags Bayesian model to fit a two baselines trophic... |

loadIsotopeData | Extract and load stable isotope data for selected consumers... |

multiModelTP | Multiple model calculation of trophic position |

multiSpeciesTP | Multiple species calculation of trophic position |

Orestias | Named list containing stable isotope values of Orestias... |

pairwiseComparisons | Function to perform pairwise comparisons between two or more... |

parametricTP | Parametric trophic position |

plot.isotopeData | Plot stable isotope data (2 elements) with one or two... |

plotMCMC | Internal function that plot a mcmc.list object. |

plotTP | Function to plot a trophic position distribution |

posteriorTP | Function to generate posterior samples of a trophic position... |

Roach | Data frame of Roach in Lough Neagh |

screenFoodWeb | Function that creates a biplot of a food web with stable... |

screenIsotopeData | Function to plot and screen stable isotope data with one or... |

simulateTDF | Simulate trophic discrimination factors |

simulateTEF | Simulate trophic enrichment factors |

summariseIsotopeData | Function that summarises a data frame containing stable... |

summary.isotopeData | Summary for stable isotope data |

TDF | Trophic discrimination factors from bibliography |

TEF | Trophic enrichment factors from bibliography |

TPmodel | Function to create a JAGS-based Bayesian model to calculate... |

trophicDensityPlot | Function to plot posterior samples of trophic position... |

Trout | Named list containing stable isotope values of Oncorhynchus... |

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