TopInteractors: Get top n protein interactors.

In AnnaTLai/CancerProtInteractors: Cancer Protein Interactors

Description

A function that uses the output data from Y2H-SCORES software functions (Banerjee et al., 2020) to find the top n interactors with the protein of interest. to work. POI stands for protein of interest.

Usage

TopInteractors(Y2H_output, n)

Value

Returns top n intdeveractors with the protein of interest.

References

Valeria Velásquez-Zapata, J Mitch Elmore, Sagnik Banerjee, Karin S Dorman, Roger P Wise (2021) Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor. PLoS Comput Biol 17(4): e1008890. Link Sagnik Banerjee, Valeria Velásquez-Zapata, Gregory Fuerst, J Mitch Elmore, Roger P Wise (2020) NGPINT: a next-generation protein–protein interaction software. Briefings in Bioinformatics: bbaa351, Link

Examples

## Not run: 

CancerProtInteractors::VisTopInteractors(Y2H_output = data_structure,
                                      n = 10)

## End(Not run)

AnnaTLai/CancerProtInteractors documentation built on Dec. 17, 2021, 8:52 a.m.