In AnzaGhaffar/SorghumTestingData: Sorghum Testing Data for Workflows

knitr::opts_chunk$set(
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SorghumTestingData

Sorghum D2 data as a reference for workflows.

Installation

You can install the released version of SorghumTestingData from Github with:

devtools::install_github("AnzaGhaffar/SorghumTestingData")
install.packages("SorghumTestingData")

Loading the Data

We will have access to the object of VCF file generated by the readVcf function The input is a file name of the vcf file right now there is only one file "freebayes_D2.unfiltered.vcf.gz"

library(SorghumTestingData)
VcfFileInstance("freebayes_D2.unfiltered.vcf.gz")

## basic example code

AnzaGhaffar/SorghumTestingData documentation built on May 23, 2020, 6:57 a.m.