GeoOrigins: GeoOrigins: functions for spatial exploration of trait...

In ArdernHB/GeoOrigins: Spatial exploration of trait boundaries and provenance

GeoOrigins: functions for spatial exploration of trait boundaries and specimen provenance

Description

GeoOrigins provides functions for provenancing specimens of unknown geographic origin to spatial regions. It also allows for the exploration and identification of trait boundaries from a distance matrix. The package includes three datasets, which are worked through in an accompanying vignette.

Details

For more information, updates or queires please see: https://github.com/ArdernHB/GeoOrigins

GeoOrigins functions

Array2Mat

BoundaryFinder

BoundaryFinderPar

GeoDist2PointTable

IDbyDistanceDistInput

IDbyDistanceDistInputCCV

IDbyDistanceDistInputCCVPar

IDbyDistanceRawData

IDbyDistanceRawDataCCV

IDbyDistanceRawDataCCVPar

Mat2Array

PlotBoundaries

ProcDistanceTable

ProcDistanceTablePar

TraitBoundaryStats

TraitBoundaryStatsPar

Datasets

Rpraetor: geometric morphometric dataset of tooth outlines of Rattus praetor (Large New Guinea spiny rat)

Marvalis: geometric morphometric dataset of tooth outlines of Microtus arvalis (Common vole)

Fteydea: Song distance dataset of Fingilla teydae (Tenerifian Blue Chaffinch)

Dataset sources

Hulme-Beaman, A., Cucchi, T., Evin, A., Searle, J. B., & Dobney, K. (2018). Exploring Rattus praetor (Rodentia, Muridae) as a possible species complex using geometric morphometrics on dental morphology. Mammalian Biology, 92(1), 62-67. https://doi.org/10.1016/j.mambio.2018.04.002

Cucchi, T., Barnett, R., Martinkova, N., Renaud, S., Renvoise, E., Evin, A., ... & Quere, J. P. (2014). The changing pace of insular life: 5000 years of microevolution in the Orkney vole (Microtus arvalis orcadensis). Evolution, 68(10), 2804-2820. https://doi.org/10.1111/evo.12476

Maintainer

Ardern Hulme-Beaman <[e-mail]>

Author(s)

Ardern Hulme-Beaman Anna Rudzinski

ArdernHB/GeoOrigins documentation built on Nov. 19, 2022, 10:21 a.m.