Man pages for ArnaudDroitLab/TranscriptomHiCs
Genomics and HiC integration
| add_annotation | Add an annotation to a GenomHiCs object. |
| annotate_count | Adds an annotation count column to a GRanges object. |
| annotate_distant_binding | Retrieves all binding types for the given annotation and... |
| annotations | Add an annotation to a GenomHiCs object. |
| build_site_list | Go from promoter/enhancer indices to a GRangesList of sites. |
| contacts | Add an annotation to a GenomHiCs object. |
| distant_binding | Retrieves all binding types for the given annotation. |
| GenomHiCs | Build a GenomHiCs object. |
| GenomHiCs-class | GenomHiCs class. |
| get_all_sites | Get a list of all sites connected to the query_regions. |
| get_direct_sites | Get a list of site directly binding the query_regions. |
| get_distant_sites | Get a list of site distantly-bound to the query_regions. |
| get_window_sites | Get a list of site binding within the windows of the... |
| is_contact_bound | Determine if query_regions are contact-bound by the given... |
| is_structure_bound | Determine if query_regions are structure-bound by the given... |
| is_window_bound | Determine if query_regions are window-bound by the given... |
| query_regions | Add an annotation to a GenomHiCs object. |
| structures | Add an annotation to a GenomHiCs object. |
