annotate_blast: Annotate blast results

In ArnaudDroitLab/wgs: Automate the downloading of genbank wgs

Description

This function will add metadata to the blast results.

Usage

annotate_blast(blast_out, metadata, dir = ".")

Arguments

blast_out	The filename of the blast results
metadata	The subset of the metadata obtained with the merge_files or the download_files functions.
dir	The directory where the fasta files are located.

Details

The blast results must contain an header with the following columns:

1. qseqid

2. sseqid

3. evalue

4. qlen

5. qlen

6. pident

7. qcovs

8. length

9. sstart

10. send

Value

A data.frame with the annotated results

Examples

## Not run: 
  metadata <- get_demo_metadata()
  annotate_blast("test.out", metadata, dir = ".")

## End(Not run)

ArnaudDroitLab/wgs documentation built on June 21, 2019, 1:51 p.m.