plot_chrom_reference: A function for plotting the ms2 chromatogram of any peptide....
In ArshiaMahmoodi/DrawAlignR: Visualizes Aligned Ms2 Chromatograms

Description Usage Arguments Value

View source: R/plot_chrom_reference.R

A function for plotting the ms2 chromatogram of any peptide. It's usage is to plot the reference chromatogram, which is the run that all other chromatograms are aligned to.

plot_chrom_reference(
  chrom,
  precursor,
  Run_ID,
  RT,
  Left_width,
  Right_width,
  mz,
  sequence
)

`chrom`	rds chromatogram file which contains a list of peptides with their retention times and intensities.
`RT`	The retention time of the peptide
`Left_width`	Left width of the retention time
`Right_width`	Right width of the retention time
`mz`	The mass to charge value of the precursor
`sequence`	The sequence of the precursor
`peptide`	the precursor id of the specific peptide you would like to plot.
`Run_Id`	The run from which the peptide came from