Man pages for ArtemSokolov/naivestates
Cell state calling using Naive Bayes
| autoMarkers | Automatically finds markers by removing blacklisted items... |
| autoSuffix | Automatically identifies the suffix in a vector of names |
| callStates | Calls cell states according to a marker -> cell state mapping |
| findDominant | Identifies a marker with the highest probability of... |
| findMarkers | Finds markers among a vector of names |
| GMMfit | Fit a Gaussian model to a set of channels |
| GMMmodels | Returns GMM models to tidy format |
| GMMreshape | Reshapes a GMMfit() dataframe to the original cell-by-marker... |
| plotFitOverview | Plots an overview of all fits |
| plotMarker | Plots a GMM fit for a single marker |
| plotProbs | Faceted UMAP plot showing probabilities of individual markers |
| plotSummary | Summary UMAP plot with points colored by cell type (dominant... |
| umap | Augments a matrix of marker probabilities with its UMAP... |
