findDominant: Identifies a marker with the highest probability of...
In ArtemSokolov/naivestates: Cell state calling using Naive Bayes
Description
Usage
Arguments
Value
Description
Identifies a marker with the highest probability of expression
Usage
1
findDominant(P, cid, vm, pthr = 0.65)
Arguments
P
Posterior probabilities, as generated by GMMreshape()
cid
Column containing cell IDs
vm
(optional) vector of markers to limit the argmax to
pthr
probability threshold above which a cell is considered to express the marker
Value
The original dataframe P augmented with the dominant marker column
ArtemSokolov/naivestates documentation built on May 31, 2021, 9:26 p.m.
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Description Usage Arguments Value
Description
Identifies a marker with the highest probability of expression
Usage
1 | findDominant(P, cid, vm, pthr = 0.65)
|
Arguments
P |
Posterior probabilities, as generated by GMMreshape() |
cid |
Column containing cell IDs |
vm |
(optional) vector of markers to limit the argmax to |
pthr |
probability threshold above which a cell is considered to express the marker |
Value
The original dataframe P augmented with the dominant marker column
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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