VDJ_visualize: VDJ_visualize

In Artur-man/VDJChef: VDJChef for vdj analysis

VDJ_visualize

Description

Visualize V, D or J gene frequencies across Patients or Samples in a bar graph.

Usage

VDJ_visualize(
  df,
  gene = "v_gene",
  chain = "TRA",
  plot = "bar",
  y.axis = "sample",
  order = "gene",
  scale = TRUE,
  split.by = NULL
)

Arguments

gene	either v_gene, d_gene or j_gene
chain	either TRA or TRB
plot	only bar
split.by	Which meta.data to split the data by.

Artur-man/VDJChef documentation built on Oct. 2, 2022, 9 p.m.