SampleOverlapMatrix: An example data of sample-overlap matrices.
In ArunabhaCodes/CPBayes: Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations
Description
Usage
Format
Examples
Description
An example data of sample-overlap matrices for five different diseases in the Kaiser
GERA cohort (a real data).
SampleOverlapMatrix is a list that contains an example of the sample overlap matrices
for five different diseases in the Kaiser GERA cohort. SampleOverlapMatrix$n11
provides the number of cases shared between all possible pairs of diseases.
SampleOverlapMatrix$n00 provides the number of controls shared between all possible
pairs of diseases. SampleOverlapMatrix$n10 provides the number of subjects who
are case for one disease and control for another disease.
Usage
1
Format
A list consisting of three integer square matrices (each of dimension 5 by 5):
- n11
number of cases shared between all possible pairs of diseases.
- n00
number of controls shared between all possible pairs of diseases.
- n10
number of subjects who are case for one disease and control for another disease.
Examples
1
2
3
4
5
6
7
8
data(SampleOverlapMatrix)
n11 <- SampleOverlapMatrix$n11
n11
n00 <- SampleOverlapMatrix$n00
n00
n10 <- SampleOverlapMatrix$n10
n10
estimate_corln(n11,n00,n10)
ArunabhaCodes/CPBayes documentation built on May 5, 2019, 8:12 a.m.
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Description Usage Format Examples
Description
An example data of sample-overlap matrices for five different diseases in the Kaiser GERA cohort (a real data). SampleOverlapMatrix is a list that contains an example of the sample overlap matrices for five different diseases in the Kaiser GERA cohort. SampleOverlapMatrix$n11 provides the number of cases shared between all possible pairs of diseases. SampleOverlapMatrix$n00 provides the number of controls shared between all possible pairs of diseases. SampleOverlapMatrix$n10 provides the number of subjects who are case for one disease and control for another disease.
Usage
1 |
Format
A list consisting of three integer square matrices (each of dimension 5 by 5):
- n11
number of cases shared between all possible pairs of diseases.
- n00
number of controls shared between all possible pairs of diseases.
- n10
number of subjects who are case for one disease and control for another disease.
Examples
1 2 3 4 5 6 7 8 | data(SampleOverlapMatrix)
n11 <- SampleOverlapMatrix$n11
n11
n00 <- SampleOverlapMatrix$n00
n00
n10 <- SampleOverlapMatrix$n10
n10
estimate_corln(n11,n00,n10)
|
ArunabhaCodes/CPBayes documentation built on May 5, 2019, 8:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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