Files in AskExplain/GeneCodeR
Transforms between image and gene expression modalities from Spatial Transcriptomics
.gitignore
DESCRIPTION
GeneCodeR.Rproj
LICENSE
NAMESPACE
R/genecoder.R
R/set_info.R
README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/_config.yml
docs/articles/analysis_of_spatial_transcriptomics.html
docs/articles/analysis_of_spatial_transcriptomics_files/figure-html/plot_base-1.png
docs/articles/analysis_of_spatial_transcriptomics_files/figure-html/plot_signal_1-1.png
docs/articles/analysis_of_spatial_transcriptomics_files/figure-html/plot_signal_2-1.png
docs/articles/analysis_of_spatial_transcriptomics_files/figure-latex/plot_base-1.pdf
docs/articles/base_validation.html
docs/articles/base_validation.png
docs/articles/base_validation_files/figure-html/plot_base-1.png
docs/articles/displace_validation.png
docs/articles/displacement_validation.html
docs/articles/index.html
docs/articles/rotation_validation.html
docs/articles/rotation_validation.png
docs/articles/signal_validation.html
docs/articles/signal_validation.png
docs/articles/signal_validation_files/figure-html/plot_signal_1-1.png
docs/articles/signal_validation_files/figure-html/plot_signal_2-1.png
docs/articles/similarity_validation.html
docs/articles/similarity_validation.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/extract_config_framework.html
docs/reference/extract_meta_framework.html
docs/reference/extract_path_framework.html
docs/reference/genecoder.html
docs/reference/genecoder.transform.html
docs/reference/index.html
docs/reference/learn_model.html
docs/reference/prepare_gex.html
docs/reference/prepare_spot.html
docs/search.json
docs/sitemap.xml
main.gif
man/extract_config_framework.Rd
man/extract_meta_framework.Rd
man/extract_path_framework.Rd
man/genecoder.Rd
man/genecoder.transform.Rd
man/learn_model.Rd
man/prepare_gex.Rd
man/prepare_spot.Rd
vignettes/analysis_of_spatial_transcriptomics.Rmd
vignettes/analysis_of_spatial_transcriptomics.html
vignettes/analysis_of_spatial_transcriptomics_files/figure-html/plot_base-1.png
vignettes/base_validation.Rmd
vignettes/base_validation.png
vignettes/displace_validation.png
vignettes/displacement_validation.Rmd
vignettes/rotation_validation.Rmd
vignettes/rotation_validation.png
vignettes/signal_validation.Rmd
vignettes/signal_validation.png
vignettes/similarity_validation.png
