prepare_gex: prepare_gex - prepares gene expression data

In AskExplain/GeneCodeR: Transforms between image and gene expression modalities from Spatial Transcriptomics

prepare_gex - prepares gene expression data

Description

prepare_gex - prepares gene expression data

Usage

prepare_gex(file_path_list, meta_info_list, config)

Arguments

file_path_list	- a list of files containing the path to all files including the gene expression path
meta_info_list	- a list of meta information that helps read in files and extracts relevant information
config	- the main configuration parameters to extract the image pixels for each corresponding spot

AskExplain/GeneCodeR documentation built on Jan. 3, 2023, 3:52 a.m.