DealGPL96: Dealing GPL96 (Affymetrix Human Genome U133A Array) RAW.tar...

In AweKevin/DealGPL96: Dealing GPL96 RAW.tar file

Description

Dealing GPL96 (Affymetrix Human Genome U133A Array) RAW.tar file using the robust multi-array average expression measure.

Usage

DealGPL96(file, type = "probeIDAndGeneSymbol")

Arguments

file	a file name specified by either a variable of mode character, or a double-quoted string, which is of 'GSE*_RAW.tar' which is of platform GPL96.
type	a character string indicating which type of data frame is to be outputted. One of 'probeIDAndGeneSymbol'(default), 'probeID', or 'geneSymbol'.

Value

a expression profile.

Examples

# You can put your own `GSE*_RAW.tar` under the working directory,
# now we download one online and have a test.
# Next step would run for about 30s, so you can try it yourself or view the vignettes

GEOquery::getGEOSuppFiles("GSE5007", makeDirectory = FALSE, baseDir = tempdir())
file <- list.files(path = tempdir(), pattern = "GSE5007_RAW.tar", full.names = TRUE)
file
result <- DealGPL96(file = file)

AweKevin/DealGPL96 documentation built on Feb. 9, 2020, 12:12 a.m.