API for BMILAB/scAPAtrap
Identification and Quantification of Alternative Polyadenylation Sites from Single-cell RNA-seq Data

Global functions
.addTrapFiles Source code
.checkAndPrintFiles Source code
.computePAcoord Source code
.findIntersectBypeak Source code
.findTails Source code
.getBAMchrs Source code
.indexBam Source code
.loadCounts Source code
.loadPeaks Source code
.loadTails Source code
.mergePA Source code
.msg Source code
.msgin Source code
.printStep Source code
.printTRAPFILES Source code
.readChrInfo Source code
.runCommand Source code
.shortStr Source code
TRAP.PARAMS Man page Source code
TRAPFILES Man page Source code
convertAPAtrapData Man page Source code
countPeaks Man page Source code
dedupByPos Man page Source code
extractBcAndUb Man page Source code
findPeaks Man page Source code
findPeaksByStrand Man page Source code
findTails Man page Source code
findTailsByPeaks Man page Source code
findUniqueMap Man page Source code
generateAlignBam Man page Source code
generateFinalBam Man page Source code
generateRefIndex Man page Source code
generateSAF Man page Source code
generatescExpMa Man page Source code
initScAPAtrap Man page Source code
loadBpCoverages Man page Source code
reducePeaks Man page Source code
scAPAtrap Man page Source code
separateBamBystrand Man page Source code
setTools Man page Source code
setTrapParams Man page Source code
validate.arg Source code
write.bed Source code
BMILAB/scAPAtrap documentation built on Oct. 13, 2023, 2:36 a.m.