TRAPFILES: TRAPFILES global variable

In BMILAB/scAPAtrap: Identification and Quantification of Alternative Polyadenylation Sites from Single-cell RNA-seq Data

TRAPFILES global variable

Description

TRAPFILES is a global variable after running scAPAtrap, containing two columns (file, what). This variable is automatically updated when running certain steps in scAPAtrap. This function get TRAPFILES or clear TRAPFILES, but cannot add/modify items (rows) in TRAPFILES.

Usage

TRAPFILES(clear = FALSE)

Arguments

clear

TRUE to clear TRAPFILES variable

Value

A data frame of files containing two columns (file, what).

Examples

TRAPFILES()
countPeaks(umitools.path='umitools.path', input='xx.bam', outputdir='xxdir', TenX=TRUE, notRun=TRUE)
TRAPFILES()
TRAPFILES(clear=TRUE)

BMILAB/scAPAtrap documentation built on Oct. 13, 2023, 2:36 a.m.